Known Issues in 20190301 autoPROC release:


Introduction

Please also check the autoPROC home page and the news page for updates and snapshot releases.


Bruker Photon-II data

The same issue as in previous snapshot version still seems to exist.


PDF report generation on Mac OsX

We have reports of problems regarding PDF generation on OsX (e.g. 10.13) systems. This should not prevent autoPROC from running to the end of a job - even if there are warnings/error messages. It is not yet clear what causes these issues and why it only happens on (some) OsX systems, but we are investigating this.


Missing GEMMI for standalone installations (fixed in snapshot 20190529).

Unfortunately the GEMMI binary is missing from standalone installations of autoPROC. Please download appropriate binary from this page:

unpack and copy to either

$autoPROC_home/autoPROC/bin/linux64/gemmi

or

$autoPROC_home/autoPROC/bin/darwin/gemmi

Then ensure the permissions are 755 e.g.

% chmod 755 $autoPROC_home/autoPROC/bin/linux64/gemmi

Alternatively place the GEMMI binary in a directory that is in $PATH.


No mmCIF files produced if run without subdir option (fixed in snapshot 20190529).

The generation of mmCIF files appears to not happen when autoPROC is run without the "-d subdir" option. If it happens for you simply cd into the directory where e.g. the process.xml file is located and run:

% aP_deposition_prep -p Data > aP_deposition_prep.txt