Known Issues in 20190923 autoPROC release:


Introduction

Please also check the autoPROC home page and the news page for updates and snapshot releases.


Bruker Photon-II data

The same issue as in previous versions still seems to exist.


Eiger HDF5/NXmx dataset conversion to mini-cbf with hdf2mini-cbf (fixed in 20200206 release)

When converting NXmx-compliant HDF5 datasets (usually from Eiger2 detectors at e.g. Diamond Light Source) into mini-cbf format using hdf2mini-cbf, the overload value written into the image header can be incorrect. Processing of those converted images will then require specifying the autoPROC_XdsKeyword_OVERLOAD manually, as in

  % process autoPROC_XdsKeyword_OVERLOAD=65535 ...

The actual value can be determined by running "imginfo" on hte *_master.h5 (or *.nxs) file:

 % imginfo /where/ever/your_1_master.h5

Please note that this will only be needed (or only have an impact) if you decide to not process those HDF5/NXmx datasets directly as-is - which is our recommendation anyway. Any normal data processing of HDF5 datasets will be unaffected by this problem.