Acknowledgements and licencing of third-party code

The BUSTER development group would like to acknowledge the following third-party code that is included in this distribution of MakeTNT:

• FitMAP is linked against several libraries from CCP4 version 6.1.0, specifically: clipper-ccp4, ccp4c, clipper-core, fftw and rfftw. Following consultation with CCP4, we have linked statically against these libraries (as we have done in previous releases of our software). In a future release, we intend to link against and distribute shared versions of these libraries, and provide their source code.

• ccp4c has been patched by us in order to allow application control of the verbosity of its output. These patches have been submitted to the CCP4 developers, and we expect them to appear in a future release of the CCP4 libraries.

• Jmol version 11.4.6: an open-source Java viewer for chemical structures in 3D. Copyright of the Jmol Development Team. Distributed under the LGPL version 2.1. The source code can be downloaded from the Jmol Sourceforge download page, currently at the URL http://sourceforge.net/project/showfiles.php?group_id=23629&package_id=16155
  

• Jmol uses a number of additional third-party components. For details, please see the file jmol-11.4.6/COPYRIGHT.txt that is included in the Jmol source code distribution, or the "About Jmol" item of the "Help" menu in the Jmol window.

• libgcc version 4.3.2. Copyright of the Free Software Foundation, Inc. Distributed under the GPL version 2 with a special exception clause. See this extract from the file gcc-4.3.2/gcc/libgcc2.h, taken from the GCC 4.3.2 distribution. The source code can be obtained by downloading the source code of GCC version 4.3.2 from the GNU FTP site or one of its mirrors: see http://gcc.gnu.org/mirrors.html for a list.

• libgcj version 9.0 . Copyright of the Free Software Foundation, Inc. Distributed under the GPL version 2 with a special exception clause. See the libgcj licence. The source code can be found in the subdirectory gcc-4.3.2/libjava of the same GCC version 4.3.2 source code distribution that contains libgcc.

• We have modified the source code of this library for the OS X build. The file in the GCC version 4.3.2 distribution that was changed is gcc-4.3.2/libjava/java/lang/natPosixProcess.cc. The modified version of this file is included in this distribution here, and the issue that prompted this modification has been reported to the GCC developers as bug 38812. This file is distributed under the GPL version 2 with the special exception clause of the libgcj licence

• Deterministic sampling methods for spheres and SO(3): Anna Yershova and Steven M. LaValle, 2004 IEEE International Conference on Robotics and Automation (ICRA 2004) Copyright: University of Illinois.

Some of the libraries listed here are distributed to you by Global Phasing Ltd. under various versions of the GNU GPL (General Public Licence) or the GNU LGPL (Lesser General Public Licence), which entitles you to recieve the source code of those libraries. In addition to using the links suggested above, you may obtain that source code directly from Global Phasing Ltd. To do this, please consult the web page that you used to download this distribution of MakeTNT. If you did not download MakeTNT from Global Phasing's web site but received it in some other way, contact us at buster-develop@globalphasing.com. Obtaining the source code from Global Phasing Ltd. other than from a download location provided by Global Phasing Ltd. may incur a fee payable by you not exceeding the cost of media, packaging and shipping.

The terms of the GPL or LGPL do not apply to any part of the MakeTNT distribution except as noted on this page.

Please note that if you re-distribute libraries in binary or object form that you have received under the terms of the GPL and/or LGPL, those licences also apply to your re-distribution. In particular, you are obliged to either re-distribute the source code yourself, or otherwise make the source code available to anyone who receives those libraries from you. Please see http://www.gnu.org/licenses/ and consult the text of the licences themselves for more information.