Covid19Pdb3TIU

Content:

• See also
• Deposited
• (Re-)refinement

See also:

• RCSB
• PDBe
• PDBj

• PDB-REDO

• PDBpeep

    Diffraction limits & principal axes of ellipsoid fitted to diffraction cut-off surface:
    2.060         0.9841   0.0000   0.1776       0.999 a* - 0.037 c*
    2.039         0.0000   1.0000   0.0000       b*
    2.002        -0.1776   0.0000   0.9841      -0.339 a* + 0.941 c*

Deposited

Molprobity (CCP4 7.0 version) summary:

Ramachandran outliers =   0.33 %   
              favored =  96.38 %   
Rotamer outliers      =   0.75 %   
C-beta deviations     =     1   
Clashscore            =   6.22   
RMS(bonds)            =   0.0153   
RMS(angles)           =   1.41   
MolProbity score      =   1.58   
Resolution            =   2.08   
R-work                =   0.1830   
R-free                =   0.2360   

Additional analysis:

Number of waters      =   326

<B> (all atoms) =   27.10 ( sd =    9.64 ) for       2760 non-hydrogen atoms
<B>   (protein) =   26.01 ( sd =    8.68 ) for       2380 non-hydrogen atoms
<B>     (water) =   31.14 ( sd =    9.81 ) for        326 non-hydrogen atoms
<B>    (others) =   50.35 ( sd =   12.22 ) for         54 non-hydrogen atoms

B min/max       (all non-hydrogen atoms) =    6.05 /   69.79
B min/max   (protein non-hydrogen atoms) =    6.05 /   65.54
B min/max     (water non-hydrogen atoms) =    9.50 /   58.56
B min/max     (other non-hydrogen atoms) =   28.32 /   69.79

BUSTER (re-)refinement

Molprobity (CCP4 7.0 version) summary:

Ramachandran outliers =   0.33 %   
              favored =  97.70 %   
Rotamer outliers      =   1.51 %   
C-beta deviations     =     0   
Clashscore            =   3.52   
RMS(bonds)            =   0.0116   
RMS(angles)           =   1.58   
MolProbity score      =   1.35   
Resolution            =   2.08   
R-work                =   0.1725   
R-free                =   0.2161   

Additional analysis:

Number of waters      =   346

<B> (all atoms) =   30.61 ( sd =   10.66 ) for       2780 non-hydrogen atoms
<B>   (protein) =   28.58 ( sd =    9.15 ) for       2380 non-hydrogen atoms
<B>     (water) =   41.65 ( sd =   11.10 ) for        346 non-hydrogen atoms
<B>    (others) =   49.33 ( sd =    6.97 ) for         54 non-hydrogen atoms

B min/max       (all non-hydrogen atoms) =   12.57 /   80.73
B min/max   (protein non-hydrogen atoms) =   12.57 /   80.73
B min/max     (water non-hydrogen atoms) =   15.42 /   72.56
B min/max     (other non-hydrogen atoms) =   37.09 /   59.72

Refinement progression:

Results: