Covid19Pdb5X4R

Content:

• See also
• Deposited
• (Re-)refinement

See also:

• RCSB
• PDBe
• PDBj

• PDB-REDO

• PDBpeep

    Diffraction limits & principal axes of ellipsoid fitted to diffraction cut-off surface:
    1.527         1.0000   0.0000   0.0000       a*
    1.484         0.0000   1.0000   0.0000       b*
    1.493         0.0000   0.0000   1.0000       c*

Deposited

Molprobity (CCP4 7.0 version) summary:

Ramachandran outliers =   0.00 %   
              favored =  96.37 %   
Rotamer outliers      =   1.03 %   
C-beta deviations     =     0   
Clashscore            =   1.70   
RMS(bonds)            =   0.0043   
RMS(angles)           =   0.95   
MolProbity score      =   1.17   
Resolution            =   1.50   
R-work                =   0.1630   
R-free                =   0.1950   

Additional analysis:

Number of waters      =   356

<B> (all atoms) =   18.00 ( sd =    8.89 ) for       3074 non-hydrogen atoms
<B>   (protein) =   16.10 ( sd =    6.63 ) for       2662 non-hydrogen atoms
<B>     (water) =   31.67 ( sd =   11.43 ) for        356 non-hydrogen atoms
<B>    (others) =   20.59 ( sd =    4.74 ) for         56 non-hydrogen atoms

B min/max       (all non-hydrogen atoms) =    5.67 /   60.87
B min/max   (protein non-hydrogen atoms) =    6.02 /   51.88
B min/max     (water non-hydrogen atoms) =    5.67 /   60.87
B min/max     (other non-hydrogen atoms) =   11.87 /   33.14

BUSTER (re-)refinement

Molprobity (CCP4 7.0 version) summary:

Ramachandran outliers =   0.00 %   
              favored =  96.68 %   
Rotamer outliers      =   0.69 %   
C-beta deviations     =     0   
Clashscore            =   1.32   
RMS(bonds)            =   0.0111   
RMS(angles)           =   1.54   
MolProbity score      =   1.07   
Resolution            =   1.50   
R-work                =   0.1832   
R-free                =   0.2026   

Additional analysis:

Number of waters      =   418

<B> (all atoms) =   18.22 ( sd =    8.97 ) for       3136 non-hydrogen atoms
<B>   (protein) =   16.13 ( sd =    6.48 ) for       2662 non-hydrogen atoms
<B>     (water) =   31.16 ( sd =   11.57 ) for        418 non-hydrogen atoms
<B>    (others) =   19.91 ( sd =    4.07 ) for         56 non-hydrogen atoms

B min/max       (all non-hydrogen atoms) =    6.24 /  100.39
B min/max   (protein non-hydrogen atoms) =    6.28 /   49.67
B min/max     (water non-hydrogen atoms) =    6.24 /  100.39
B min/max     (other non-hydrogen atoms) =   13.39 /   28.59

Refinement progression:

Results: