[buster-discuss] buster and DNA?
sabine.schneider at cup.uni-muenchen.de
Fri Jun 11 17:16:49 CEST 2010
I am want to refine a protein-DNA complex in buster, but I am struggling
with the nomenclature for DNA.
If I add DNA to the pdb file, buster fails with the following error
message despite that there is a dictionary for the nucleotides:
WARNING : using geometric restraints for Gd from file
this file was generated automatically using the
CCP4/Refmac distributed dictionaries. Although we
believe them to be of good quality, it was not
checked manually. Therefore, it is supplied
without any guarantee - if you prefer your own
geometric restraints dictionary, please create it
with one of the programs in the MakeTNT toolbox
and supply it directly (see documentation).
I also tried changing it to GD, GUA, G as well as swapping the * for ',
O1P to OP1 and so on....
In addition I generated a dictionary file using TNT which also failed.
Any help is much appreciated!
Dr. Sabine Schneider
Department of Chemistry
Butenandtstrasse 5-13, Building F
Phone: +49 (0)89 2180 77752
Fax: +49 (0)89 2180 77756
More information about the buster-discuss