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<DIV><FONT face=Arial size=2>Dear all,</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>I installed the Linux version of Buster-TNT last
week but met two errors when using it.</FONT></DIV>
<OL>
<LI><FONT face=Arial size=2>The script to produce TNT sequence file did not
work. When I execute the following commend in Linux shell:</FONT></LI></OL>
<DIV><FONT face=Arial
size=2>
$BDG_home/bin/buster/pirToSeq.pl -m < test.pir > test.seq</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial
size=2> It always gave me
the following prompt</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial
size=2>
pirToSeq usage: [-m] [-s offset] <PIR>
<SEQ><BR>
-m : the user is prompted with chain
type<BR>
(useful in case of
complexes)<BR>
-s offset : number of first residue in PDB
file<BR>
<PIR> : PIR file as for
ARP/wARP<BR>
<SEQ> : output sequence file in TNT
format<BR></FONT></DIV>
<DIV><FONT face=Arial
size=2> The output
file test.seq is empty and I have to create it by manual input.</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2> 2. When press
Start button on http browser for a new Buster job, I always received an error
message as follows.</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>ERROR in
/home/xray/wliu/software/buster/buffet/cgi-bin/inputform.cgi</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2> The following return values are
set:</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2> * Child error =
0<BR> * OS error = Inappropriate ioctl for
device<BR> * Eval error = 0 </FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>Error message : Error parsing the
mtzdump output
of<BR>/home/xray/wliu/software/buster/users/wliu/tphr_oligo34.buster/datafiles/tphr_oligo34.mtz<BR>Cell/symmetry/resolution
information is missing <BR></FONT></DIV>
<DIV><FONT face=Arial
size=2>
However, my mtz file was created by CCP4 5.02 and all information are presented
inside. Even if I copied a data file form tutorial directory in
$BDG_home/busterfiles/datafiles/, the error was still there. As a consequence of
this error, I cannot continue to run the program.</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2> Any help
will be highly appreciated. </FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>With kind regards</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>Wei Liu</FONT></DIV>
<DIV><FONT face=Arial size=2>Ph.D.</FONT></DIV>
<DIV><FONT face=Arial size=2>Center for Structural Biochemistry</FONT></DIV>
<DIV><FONT face=Arial size=2>Karolinska Institute</FONT></DIV>
<DIV><FONT face=Arial size=2>Novum 14157, Huddinge</FONT></DIV>
<DIV><FONT face=Arial size=2>Sweden</DIV></FONT></FONT></DIV></BODY></HTML>