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<div class="moz-cite-prefix">On 05/12/12 18:17, Thomas Krey wrote:<br>
</div>
<blockquote
cite="mid:B5BF93C3-2E5E-436A-B12D-55550ACC54AD@pasteur.fr"
type="cite">
<pre wrap="">Dear gphl-team,
I am having a little problem when running buster (since the update on Mountain Lion - Mac OS X 10.8).
I am getting the follloowing error message :
>>> ab_pdb2tnt >>>
>>> ab_pdb2tnt >>> Extracted from file 1/01-BUSTER/Rigid-1/ab_pdb2tnt.log :
>>> ab_pdb2tnt >>>
>>> ab_pdb2tnt >>> ERROR : [pdb2tnt-0014] empty file after running "pdbtools
>>> ab_pdb2tnt >>> --silent -p
>>> ab_pdb2tnt >>> /tmp/tkrey-BUSTER/tkrey-1354713549-ab_pdb2tnt__42754.pdb
>>> ab_pdb2tnt >>> -o
>>> ab_pdb2tnt >>> /tmp/tkrey-BUSTER/tkrey-1354713549-ab_pdb2tnt__42754.pdb1
>>> ab_pdb2tnt >>> -Task GetBestResidue -NoCell"
>>> ab_pdb2tnt >>>
</pre>
</blockquote>
<br>
Thomas,<br>
<br>
Would it be possible for you to email me the input pdb file that
went into pdbtools - <br>
<pre wrap="">/tmp/tkrey-BUSTER/tkrey-1354713549-ab_pdb2tnt__42754.pdb</pre>
and also the file <br>
<pre wrap="">1/01-BUSTER/Rigid-1/ab_pdb2tnt.log</pre>
<br>
Thanks<br>
<br>
Andrew Sharff<br>
<br>
<blockquote
cite="mid:B5BF93C3-2E5E-436A-B12D-55550ACC54AD@pasteur.fr"
type="cite">
<pre wrap="">
ERROR : [run_buster-0032] problems in ab_pdb2tnt - see
above and 1/01-BUSTER/Rigid-1/ab_pdb2tnt.log
ERROR : [refine-0055] problems in run_buster: see messages
above
Any help would be greatly appreciated.
Thanks so much in advance
Cheers
Thomas
Dr. Thomas Krey
Institut Pasteur
Structural Virology Unit
25-28 Rue du Docteur Roux
75015 Paris
France
<a class="moz-txt-link-abbreviated" href="mailto:tkrey@pasteur.fr">tkrey@pasteur.fr</a>
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</pre>
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<div class="moz-signature">-- <br>
<div class="moz-signature">
<title></title>
----------------------------------------------------------<br>
<b><font color="#3333ff">Dr. Andrew J. Sharff </font><font
color="#3333ff">D.Phil</font></b><b><font color="#3333ff"><br>
</font></b><font color="#3333ff"><font color="#000000">Research
Scientist
/ Software Developer<br>
Global Phasing Ltd<br>
Sheraton House<br>
Castle Park<br>
Cambridge CB3 0AX<br>
UK<br>
Tel: +(0)1223 353033<br>
Fax: +(0)1223 366889<br>
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