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<div class="moz-cite-prefix">Dear Clemens and Andrew,</div>
<div class="moz-cite-prefix"><br>
</div>
<div class="moz-cite-prefix">thanks a lot for the detailed
suggestions. Just a quick feedback:<br>
</div>
<div class="moz-cite-prefix">Installation of CCP4 did not change
after BUSTER setup.</div>
<div class="moz-cite-prefix">$BDG_home/machines/*/ccp4.setup looks
fine:</div>
<div class="moz-cite-prefix"><font size="-1" face="Courier New,
Courier, monospace">.....<br>
# root directory of CCP4 installation (absolute directory path):<br>
[ "X$KeepFromEnv_CCP4" != "Xyes" ] && \<br>
CCP4="/opt/software/CCP4/7.1/ccp4-7.1"<br>
[ "X$CCP4" != "X" ] && [ "X$CCP4" != "Xno default" ]
&& export CCP4 || unset CCP4</font></div>
<div class="moz-cite-prefix"><font size="-1" face="Courier New,
Courier, monospace">.....<br>
</font></div>
<div class="moz-cite-prefix"><br>
</div>
<div class="moz-cite-prefix">But checkdeps yields that I am missing
CGI module (seee below). I will investigate later today. :)</div>
<div class="moz-cite-prefix">Thanks again and best wishes, <br>
</div>
<div class="moz-cite-prefix">Guenter<br>
</div>
<div class="moz-cite-prefix"><br>
</div>
<div class="moz-cite-prefix"><font size="-1" face="Courier New,
Courier, monospace">[guenter@epikur ~]$ hydrogenate -checkdeps<br>
Can't locate CGI.pm in @INC (you may need to install the CGI
module) (@INC contains:
/opt/software/GP/BUSTER/BUSTER_snapshot_20210224/scripts/buster-report-lib
/usr/local/lib64/perl5 /usr/local/share/perl5
/usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl
/usr/lib64/perl5 /usr/share/perl5) at
/opt/software/GP/BUSTER/BUSTER_snapshot_20210224/scripts/buster-report-lib/Abt_molprobity.pm
line 21.<br>
BEGIN failed--compilation aborted at
/opt/software/GP/BUSTER/BUSTER_snapshot_20210224/scripts/buster-report-lib/Abt_molprobity.pm
line 21.<br>
Compilation failed in require at
/opt/software/GP/BUSTER/BUSTER_snapshot_20210224/scripts/hydrogenate
line 26.<br>
BEGIN failed--compilation aborted at
/opt/software/GP/BUSTER/BUSTER_snapshot_20210224/scripts/hydrogenate
line 26.</font><br>
<br>
</div>
<blockquote type="cite"
cite="mid:20210226122214.GQ4576@babinet.globalphasing.com">
<pre class="moz-quote-pre" wrap="">On Wed, Feb 24, 2021 at 09:10:41PM +0100, Guenter Fritz wrote:
</pre>
<blockquote type="cite">
<pre class="moz-quote-pre" wrap="">I was trying to run pipedream, but get the notice that reduce is not in the
path, although it is.
</pre>
</blockquote>
<pre class="moz-quote-pre" wrap="">
Not good.
</pre>
<blockquote type="cite">
<pre class="moz-quote-pre" wrap="">Below is my input and the output.� Any hintwhat I am doing wrong is welcome.
</pre>
</blockquote>
<pre class="moz-quote-pre" wrap="">
Your input looks all fine.
</pre>
<blockquote type="cite">
<pre class="moz-quote-pre" wrap="">System is Centos 8, CCP4 is 7.1, latest release of buster from today.
</pre>
</blockquote>
<pre class="moz-quote-pre" wrap="">
BUSTER programs are not (directly) using the CCP4 system in your
current shells environment, but rather the settings as they were
available during installation: these are then stored in
$BDG_home/machines/*/ccp4.setup. So several things could be happening
here:
(1) Your CCP4 installation has moved/changed between the BUSTER
installation and the time you are running our programs.
(2) Installation of BUSTER on one machine sees a different CCP4
location to the machine you are running the software on, e.g.
(a) installation in machine A with CCP4 in /usr/local/ccp4-7.1
(b) running on machine B where CCP4 is now
/opt/software/CCP4/7.1/ccp4-7.1
(3) Use of an "automounter" (autofs etc) that introduces differences
on different machines, e.g. $CCP4 actually points to
e.g. /.net/opt/software/CCP4/7.1/ccp4-7.1 or such.
In all those cases you would see a "hydropgenate -checkdeps" failure
(which is the actual error triggereing the error message). What is
important:
(1) Ensure that external software (like CCP4) is accessible through
the same path on all machines you intend to run our software on.
(2) Ensure that this common path (excluding automount mixups) is set
in e.g. $BDG_home/machines/*/ccp4.setup.
After any changes to $BDG_home/machines/*/ccp4.setup, re-run
"hydropgenate -checkdeps" or even better the full
checkdeps -n
to test your installation (ideally on the machine(s) you want to
actually run the software on).
Does that help?
Cheers
Clemens & Andrew
</pre>
</blockquote>
<p><br>
</p>
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