<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><font face="Menlo" class="">Hi there,</font><div class=""><font face="Menlo" class=""><br class=""></font></div><div class=""><font face="Menlo" class="">I am new to Buster and have just installed the “<span style="font-size: 11px;" class="">BUSTER_snapshot_20210420</span><span style="font-size: 11px;" class="">”</span><span style="font-size: 11px;" class=""> on my Mac. I tried to run the refinement using script file but I do keep getting following error:</span></font></div><div class=""><font face="Menlo" class=""><span style="font-size: 11px;" class=""><br class=""></span></font></div><div class=""><div style="margin: 0px; font-stretch: normal; line-height: normal;" class=""><b class=""><span style="font-size: 11px; font-variant-ligatures: no-common-ligatures;" class=""><font face="Menlo" class="">[refine-0009] unknown argument “partA.sh</font></span><font face="Menlo" class=""><span style="font-size: 11px;" class="">”</span></font></b></div></div><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font face="Menlo" class=""><br class=""></font></span></div><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font face="Menlo" class="">I have no idea what this error means as there is no further detail about the error and attached with this email is the script file. Could you please help me with fixing this?</font></span></div><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font face="Menlo" class=""><br class=""></font></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal;" class=""><span style="font-size: 11px; font-variant-ligatures: no-common-ligatures;" class=""><font face="Menlo" class="">I have not installed mogul due to the Mac version (Big Surf version </font></span><font face="Menlo" class=""><span style="font-size: 11px;" class="">11.3.1) I am currently using and license issue. Could that be the reason for the error? And is there a way to use eLBOW output CIF file to be used as input in BUSTER. My attempt to run refine with -d, -m and -L straight into the terminal with use of CIF file from grade web server too gives the same error with unknown argument pointing to the cif file path.</span></font></div><div style="margin: 0px; font-stretch: normal; line-height: normal;" class=""><font face="Menlo" class=""><span style="font-size: 11px;" class=""><br class=""></span></font></div><div style="margin: 0px; font-stretch: normal; line-height: normal;" class=""><font face="Menlo" class=""><span style="font-size: 11px;" class="">Could someone please help me run the script with ligand ON</span></font></div><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font face="Menlo" class=""><br class=""></font></span></div><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font face="Menlo" class="">Thanking you in advance for the valuable time.</font></span></div><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font face="Menlo" class=""><br class=""></font></span></div><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font face="Menlo" class="">Cheers,</font></span></div><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font face="Menlo" class=""><br class=""></font></span></div><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal;" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""><font face="Menlo" class="">World light</font></span></div><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal;" class=""></div></body></html>