<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hello,<div class=""><br class=""></div><div class="">I would like to prepare files for PDB deposition after data processing with autoProc and refinement with buster. I use <span style="font-family: Menlo;" class="">aB_deposition_combine </span>in order to combine informations from reflection files from autoProc and buster. Howewer, I only get NOTEs about « too few matches found » and no files are produced. See the transcript below. Do I miss something in the usage of the command?</div><div class="">Thanks for any tip!</div><div class="">Have a nice weekend</div><div class="">Laurent</div><div class=""><br class=""></div><div class="">Process_03 is the folder produced by autoProc (-d process_03). Running with <font face="Menlo" class="">-aP ./process_03/Data_1_autoPROC_STARANISO_all.cif </font>does not help. </div><div class=""><br class=""></div><div class=""><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">(base) % aB_deposition_combine -aP ./process_03/ ./refine_08/BUSTER_model.cif ./refine_08/BUSTER_refln.cif </span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class=""></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> ##############################################################################</span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> # This software is licenced to : Centre Natinonal de la Recherche Scientifique, Institut de Pharmacologie et de Biologie Structurale </span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> ##############################################################################</span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class=""></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> ##############################################################################</b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> ## [aB_deposition_combine] Tool to help combining mmCIF files for PDB deposition</b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> ##############################################################################</b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class=""></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> Copyright (C) 1992-2022 by Global Phasing Limited</b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> </b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> All rights reserved.</b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> </b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> This software is proprietary to and embodies the confidential</b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> technology of Global Phasing Limited (GPhL). Possession, use,</b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> duplication or dissemination of the software is authorised</b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> only pursuant to a valid written licence from GPhL.</b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class=""></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> Version: 2.10.4 <2022-06-08 01:47:47></b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class=""></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> ------------------------------------------------------------------------------</b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class=""></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> Reference: Bricogne G, Blanc E, Brandl M, Flensburg C, Keller P,</b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> Paciorek W, Roversi P, Sharff A, Smart O, Vonrhein C,</b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> Womack T (2022). BUSTER version 2.10.4. Cambridge, United</b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> Kingdom: Global Phasing Ltd.</b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> </b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> Authors: (2020-2021) Bricogne G, Flensburg C, Keller P, Vonrhein C, Wojdyr M</b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class=""></div><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> Contact: <a href="mailto:buster-develop@GlobalPhasing.com" class="">buster-develop@GlobalPhasing.com</a></span></div><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> ==============================================================================</span></div><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> <b class="">NOTE</b> : found 32/100 in</span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> ./process_03//Data_1_autoPROC_STARANISO_all.cif</span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> (1_staraniso)</span></div><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> <b class="">NOTE</b> : too few matches found</span></div><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> <b class="">NOTE</b> : found 0/100 in</span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> ./process_03//Data_1_autoPROC_STARANISO_all.cif</span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> (1_staraniso_early)</span></div><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> <b class="">NOTE</b> : too few matches found</span></div><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> <b class="">NOTE</b> : found 0/100 in</span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> ./process_03//Data_1_autoPROC_STARANISO_all.cif</span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> (1_staraniso_late)</span></div><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> <b class="">NOTE</b> : too few matches found</span></div><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> <b class="">NOTE</b> : found 0/100 in</span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> ./process_03//Data_2_autoPROC_TRUNCATE_all.cif</span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> (2_truncate)</span></div><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> <b class="">NOTE</b> : too few matches found</span></div><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> <b class="">NOTE</b> : found 0/100 in</span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> ./process_03//Data_2_autoPROC_TRUNCATE_all.cif</span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> (2_truncate_early)</span></div><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> <b class="">NOTE</b> : too few matches found</span></div><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> <b class="">NOTE</b> : found 0/100 in</span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> ./process_03//Data_2_autoPROC_TRUNCATE_all.cif</span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> (2_truncate_late)</span></div><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> <b class="">NOTE</b> : too few matches found</span></div><p style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> </span><br class="webkit-block-placeholder"></p><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class=""></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> Normal termination (31 sec)</b></span></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo; min-height: 19px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class=""></div><div style="margin: 0px; font-stretch: normal; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class=""> ##############################################################################</b></span></div></div><div class=""><div class=""><div class=""><div class="">
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