From vkabale@uoft02.utoledo.edu Tue Apr 2 21:21:04 2002
From: vkabale@uoft02.utoledo.edu (Venkataraman Kabaleeswaran)
Date: Tue, 02 Apr 2002 15:21:04 -0500
Subject: [sharp-discuss] -residual map using CCP4 unofficial version 4L1
Message-ID: <01KG3CU62YS4001F28@uoft02.utoledo.edu>
hi clemens
After the installation of latest release - Sushi 3.0.7 is working fine
without any error message for CCP4 - 4L1 version.
thanks
Venkataraman
From alexein@bcm.tmc.edu Thu Apr 4 21:10:06 2002
From: alexein@bcm.tmc.edu (Alexei Nickitenko)
Date: Thu, 04 Apr 2002 14:10:06 -0600
Subject: [sharp-discuss] syntax error at CsiteDel.pl
Message-ID: <3CACB31E.6070308@bcm.tmc.edu>
--------------090904030101010005090900
Content-Type: text/plain; charset=us-ascii; format=flowed
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900
Content-Type: text/html; charset=us-ascii
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900--
From vonrhein@globalphasing.com Fri Apr 5 08:06:02 2002
From: vonrhein@globalphasing.com (Clemens Vonrhein)
Date: Fri, 5 Apr 2002 08:06:02 +0100
Subject: [sharp-discuss] syntax error at CsiteDel.pl
In-Reply-To: <3CACB31E.6070308@bcm.tmc.edu>
References: <3CACB31E.6070308@bcm.tmc.edu>
Message-ID: <20020405070601.GA3162@galois.globalphasing.com>
Dear Alex,
yes, there was a typo in this file. The current version of Sushi (3.0.7)
(available on our WWW site through
http://www.globalphasing.com/sharp/download/index.html) fixes this
(among a few other things). So please update your installation, which
is done by
1. download a new sushi.tar.gz and installSHARP to your $BDG_home
directory
2. stop your running httpd:
% cd $BDG_home
% adm/bin/kill_server
3. update installation:
% ./installSHARP -u
4. restart server:
% adm/bin/restart_server
That should do the trick.
Cheers
Clemens
PS: if your user name/password has expired for the download pages,
please let us know and we'll send you the current one.
On Thu, Apr 04, 2002 at 02:10:06PM -0600, Alexei Nickitenko wrote:
> Dear Clemens,
>
> My autoSHARP give me the next error when it's trying to delete missing
> c-sites?
>
>
> 4. Removing missing C-SITES
>
> syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line
> 88, near "+ }"
> Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted
> due to compilation errors.
>
>
> Thanks,
>
> Alex
--
***************************************************************
* Clemens Vonrhein, Ph.D. vonrhein@GlobalPhasing.com
*
* Global Phasing Ltd.
* Sheraton House, Castle Park Tel: +44-(0)1223-353033
* Cambridge CB3 0AX, UK Fax: +44-(0)1223-366889
*--------------------------------------------------------------
* BUSTER Development Group (http://www.globalphasing.com)
***************************************************************
From derek.logan@mbfys.lu.se Mon Apr 15 15:32:55 2002
From: derek.logan@mbfys.lu.se (Derek Logan)
Date: Mon, 15 Apr 2002 16:32:55 +0200
Subject: [sharp-discuss] runsharp.sh and resolution
Message-ID:
Hi,
I have two questions relating to SHARP, one administrative and one
user-oriented:
1) If I try to run SHARP based on a previous run, I get no log file,
only STDERR with content:
/usr/local/xtal/sharp/bin/sharp/runsharp.sh: pwd: read error in ..
/logfiles/MAD.8: No such file or directory
The second line is obviously a consequence of a variable not being set
by pwd, but why pwd in runsharp.sh doesn't work, I have no idea. SHARP
runs no problem when called by autoSHARP (as witness the fact that I had
some old runs to base new ones on!)
2) Is there an easy way to change the resolution of the phase
improvement procedures? Our input file goes to significantly higher
resolution than the acceptable FOM. I tried editing for_solo.asc, like
one used to do with the old SHARP, but this doesn't seem to help. Of
course one can go and cut off the input MTZ file at lower resolution,
but this is not so convenient.
From vkabale@uoft02.utoledo.edu Tue Apr 2 21:21:04 2002
From: vkabale@uoft02.utoledo.edu (Venkataraman Kabaleeswaran)
Date: Tue, 02 Apr 2002 15:21:04 -0500
Subject: [sharp-discuss] -residual map using CCP4 unofficial version 4L1
Message-ID: <01KG3CU62YS4001F28@uoft02.utoledo.edu>
hi clemens
After the installation of latest release - Sushi 3.0.7 is working fine
without any error message for CCP4 - 4L1 version.
thanks
Venkataraman
From alexein@bcm.tmc.edu Thu Apr 4 21:10:06 2002
From: alexein@bcm.tmc.edu (Alexei Nickitenko)
Date: Thu, 04 Apr 2002 14:10:06 -0600
Subject: [sharp-discuss] syntax error at CsiteDel.pl
Message-ID: <3CACB31E.6070308@bcm.tmc.edu>
--------------090904030101010005090900
Content-Type: text/plain; charset=us-ascii; format=flowed
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900
Content-Type: text/html; charset=us-ascii
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900--
From vonrhein@globalphasing.com Fri Apr 5 08:06:02 2002
From: vonrhein@globalphasing.com (Clemens Vonrhein)
Date: Fri, 5 Apr 2002 08:06:02 +0100
Subject: [sharp-discuss] syntax error at CsiteDel.pl
In-Reply-To: <3CACB31E.6070308@bcm.tmc.edu>
References: <3CACB31E.6070308@bcm.tmc.edu>
Message-ID: <20020405070601.GA3162@galois.globalphasing.com>
Dear Alex,
yes, there was a typo in this file. The current version of Sushi (3.0.7)
(available on our WWW site through
http://www.globalphasing.com/sharp/download/index.html) fixes this
(among a few other things). So please update your installation, which
is done by
1. download a new sushi.tar.gz and installSHARP to your $BDG_home
directory
2. stop your running httpd:
% cd $BDG_home
% adm/bin/kill_server
3. update installation:
% ./installSHARP -u
4. restart server:
% adm/bin/restart_server
That should do the trick.
Cheers
Clemens
PS: if your user name/password has expired for the download pages,
please let us know and we'll send you the current one.
On Thu, Apr 04, 2002 at 02:10:06PM -0600, Alexei Nickitenko wrote:
> Dear Clemens,
>
> My autoSHARP give me the next error when it's trying to delete missing
> c-sites?
>
>
> 4. Removing missing C-SITES
>
> syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line
> 88, near "+ }"
> Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted
> due to compilation errors.
>
>
> Thanks,
>
> Alex
--
***************************************************************
* Clemens Vonrhein, Ph.D. vonrhein@GlobalPhasing.com
*
* Global Phasing Ltd.
* Sheraton House, Castle Park Tel: +44-(0)1223-353033
* Cambridge CB3 0AX, UK Fax: +44-(0)1223-366889
*--------------------------------------------------------------
* BUSTER Development Group (http://www.globalphasing.com)
***************************************************************
From derek.logan@mbfys.lu.se Mon Apr 15 15:32:55 2002
From: derek.logan@mbfys.lu.se (Derek Logan)
Date: Mon, 15 Apr 2002 16:32:55 +0200
Subject: [sharp-discuss] runsharp.sh and resolution
Message-ID:
Hi,
I have two questions relating to SHARP, one administrative and one
user-oriented:
1) If I try to run SHARP based on a previous run, I get no log file,
only STDERR with content:
/usr/local/xtal/sharp/bin/sharp/runsharp.sh: pwd: read error in ..
/logfiles/MAD.8: No such file or directory
The second line is obviously a consequence of a variable not being set
by pwd, but why pwd in runsharp.sh doesn't work, I have no idea. SHARP
runs no problem when called by autoSHARP (as witness the fact that I had
some old runs to base new ones on!)
2) Is there an easy way to change the resolution of the phase
improvement procedures? Our input file goes to significantly higher
resolution than the acceptable FOM. I tried editing for_solo.asc, like
one used to do with the old SHARP, but this doesn't seem to help. Of
course one can go and cut off the input MTZ file at lower resolution,
but this is not so convenient.
From vkabale@uoft02.utoledo.edu Tue Apr 2 21:21:04 2002
From: vkabale@uoft02.utoledo.edu (Venkataraman Kabaleeswaran)
Date: Tue, 02 Apr 2002 15:21:04 -0500
Subject: [sharp-discuss] -residual map using CCP4 unofficial version 4L1
Message-ID: <01KG3CU62YS4001F28@uoft02.utoledo.edu>
hi clemens
After the installation of latest release - Sushi 3.0.7 is working fine
without any error message for CCP4 - 4L1 version.
thanks
Venkataraman
From alexein@bcm.tmc.edu Thu Apr 4 21:10:06 2002
From: alexein@bcm.tmc.edu (Alexei Nickitenko)
Date: Thu, 04 Apr 2002 14:10:06 -0600
Subject: [sharp-discuss] syntax error at CsiteDel.pl
Message-ID: <3CACB31E.6070308@bcm.tmc.edu>
--------------090904030101010005090900
Content-Type: text/plain; charset=us-ascii; format=flowed
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900
Content-Type: text/html; charset=us-ascii
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900--
From vonrhein@globalphasing.com Fri Apr 5 08:06:02 2002
From: vonrhein@globalphasing.com (Clemens Vonrhein)
Date: Fri, 5 Apr 2002 08:06:02 +0100
Subject: [sharp-discuss] syntax error at CsiteDel.pl
In-Reply-To: <3CACB31E.6070308@bcm.tmc.edu>
References: <3CACB31E.6070308@bcm.tmc.edu>
Message-ID: <20020405070601.GA3162@galois.globalphasing.com>
Dear Alex,
yes, there was a typo in this file. The current version of Sushi (3.0.7)
(available on our WWW site through
http://www.globalphasing.com/sharp/download/index.html) fixes this
(among a few other things). So please update your installation, which
is done by
1. download a new sushi.tar.gz and installSHARP to your $BDG_home
directory
2. stop your running httpd:
% cd $BDG_home
% adm/bin/kill_server
3. update installation:
% ./installSHARP -u
4. restart server:
% adm/bin/restart_server
That should do the trick.
Cheers
Clemens
PS: if your user name/password has expired for the download pages,
please let us know and we'll send you the current one.
On Thu, Apr 04, 2002 at 02:10:06PM -0600, Alexei Nickitenko wrote:
> Dear Clemens,
>
> My autoSHARP give me the next error when it's trying to delete missing
> c-sites?
>
>
> 4. Removing missing C-SITES
>
> syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line
> 88, near "+ }"
> Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted
> due to compilation errors.
>
>
> Thanks,
>
> Alex
--
***************************************************************
* Clemens Vonrhein, Ph.D. vonrhein@GlobalPhasing.com
*
* Global Phasing Ltd.
* Sheraton House, Castle Park Tel: +44-(0)1223-353033
* Cambridge CB3 0AX, UK Fax: +44-(0)1223-366889
*--------------------------------------------------------------
* BUSTER Development Group (http://www.globalphasing.com)
***************************************************************
From derek.logan@mbfys.lu.se Mon Apr 15 15:32:55 2002
From: derek.logan@mbfys.lu.se (Derek Logan)
Date: Mon, 15 Apr 2002 16:32:55 +0200
Subject: [sharp-discuss] runsharp.sh and resolution
Message-ID:
Hi,
I have two questions relating to SHARP, one administrative and one
user-oriented:
1) If I try to run SHARP based on a previous run, I get no log file,
only STDERR with content:
/usr/local/xtal/sharp/bin/sharp/runsharp.sh: pwd: read error in ..
/logfiles/MAD.8: No such file or directory
The second line is obviously a consequence of a variable not being set
by pwd, but why pwd in runsharp.sh doesn't work, I have no idea. SHARP
runs no problem when called by autoSHARP (as witness the fact that I had
some old runs to base new ones on!)
2) Is there an easy way to change the resolution of the phase
improvement procedures? Our input file goes to significantly higher
resolution than the acceptable FOM. I tried editing for_solo.asc, like
one used to do with the old SHARP, but this doesn't seem to help. Of
course one can go and cut off the input MTZ file at lower resolution,
but this is not so convenient.
From vkabale@uoft02.utoledo.edu Tue Apr 2 21:21:04 2002
From: vkabale@uoft02.utoledo.edu (Venkataraman Kabaleeswaran)
Date: Tue, 02 Apr 2002 15:21:04 -0500
Subject: [sharp-discuss] -residual map using CCP4 unofficial version 4L1
Message-ID: <01KG3CU62YS4001F28@uoft02.utoledo.edu>
hi clemens
After the installation of latest release - Sushi 3.0.7 is working fine
without any error message for CCP4 - 4L1 version.
thanks
Venkataraman
From alexein@bcm.tmc.edu Thu Apr 4 21:10:06 2002
From: alexein@bcm.tmc.edu (Alexei Nickitenko)
Date: Thu, 04 Apr 2002 14:10:06 -0600
Subject: [sharp-discuss] syntax error at CsiteDel.pl
Message-ID: <3CACB31E.6070308@bcm.tmc.edu>
--------------090904030101010005090900
Content-Type: text/plain; charset=us-ascii; format=flowed
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900
Content-Type: text/html; charset=us-ascii
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900--
From vonrhein@globalphasing.com Fri Apr 5 08:06:02 2002
From: vonrhein@globalphasing.com (Clemens Vonrhein)
Date: Fri, 5 Apr 2002 08:06:02 +0100
Subject: [sharp-discuss] syntax error at CsiteDel.pl
In-Reply-To: <3CACB31E.6070308@bcm.tmc.edu>
References: <3CACB31E.6070308@bcm.tmc.edu>
Message-ID: <20020405070601.GA3162@galois.globalphasing.com>
Dear Alex,
yes, there was a typo in this file. The current version of Sushi (3.0.7)
(available on our WWW site through
http://www.globalphasing.com/sharp/download/index.html) fixes this
(among a few other things). So please update your installation, which
is done by
1. download a new sushi.tar.gz and installSHARP to your $BDG_home
directory
2. stop your running httpd:
% cd $BDG_home
% adm/bin/kill_server
3. update installation:
% ./installSHARP -u
4. restart server:
% adm/bin/restart_server
That should do the trick.
Cheers
Clemens
PS: if your user name/password has expired for the download pages,
please let us know and we'll send you the current one.
On Thu, Apr 04, 2002 at 02:10:06PM -0600, Alexei Nickitenko wrote:
> Dear Clemens,
>
> My autoSHARP give me the next error when it's trying to delete missing
> c-sites?
>
>
> 4. Removing missing C-SITES
>
> syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line
> 88, near "+ }"
> Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted
> due to compilation errors.
>
>
> Thanks,
>
> Alex
--
***************************************************************
* Clemens Vonrhein, Ph.D. vonrhein@GlobalPhasing.com
*
* Global Phasing Ltd.
* Sheraton House, Castle Park Tel: +44-(0)1223-353033
* Cambridge CB3 0AX, UK Fax: +44-(0)1223-366889
*--------------------------------------------------------------
* BUSTER Development Group (http://www.globalphasing.com)
***************************************************************
From derek.logan@mbfys.lu.se Mon Apr 15 15:32:55 2002
From: derek.logan@mbfys.lu.se (Derek Logan)
Date: Mon, 15 Apr 2002 16:32:55 +0200
Subject: [sharp-discuss] runsharp.sh and resolution
Message-ID:
Hi,
I have two questions relating to SHARP, one administrative and one
user-oriented:
1) If I try to run SHARP based on a previous run, I get no log file,
only STDERR with content:
/usr/local/xtal/sharp/bin/sharp/runsharp.sh: pwd: read error in ..
/logfiles/MAD.8: No such file or directory
The second line is obviously a consequence of a variable not being set
by pwd, but why pwd in runsharp.sh doesn't work, I have no idea. SHARP
runs no problem when called by autoSHARP (as witness the fact that I had
some old runs to base new ones on!)
2) Is there an easy way to change the resolution of the phase
improvement procedures? Our input file goes to significantly higher
resolution than the acceptable FOM. I tried editing for_solo.asc, like
one used to do with the old SHARP, but this doesn't seem to help. Of
course one can go and cut off the input MTZ file at lower resolution,
but this is not so convenient.
From vkabale@uoft02.utoledo.edu Tue Apr 2 21:21:04 2002
From: vkabale@uoft02.utoledo.edu (Venkataraman Kabaleeswaran)
Date: Tue, 02 Apr 2002 15:21:04 -0500
Subject: [sharp-discuss] -residual map using CCP4 unofficial version 4L1
Message-ID: <01KG3CU62YS4001F28@uoft02.utoledo.edu>
hi clemens
After the installation of latest release - Sushi 3.0.7 is working fine
without any error message for CCP4 - 4L1 version.
thanks
Venkataraman
From alexein@bcm.tmc.edu Thu Apr 4 21:10:06 2002
From: alexein@bcm.tmc.edu (Alexei Nickitenko)
Date: Thu, 04 Apr 2002 14:10:06 -0600
Subject: [sharp-discuss] syntax error at CsiteDel.pl
Message-ID: <3CACB31E.6070308@bcm.tmc.edu>
--------------090904030101010005090900
Content-Type: text/plain; charset=us-ascii; format=flowed
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900
Content-Type: text/html; charset=us-ascii
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900--
From vonrhein@globalphasing.com Fri Apr 5 08:06:02 2002
From: vonrhein@globalphasing.com (Clemens Vonrhein)
Date: Fri, 5 Apr 2002 08:06:02 +0100
Subject: [sharp-discuss] syntax error at CsiteDel.pl
In-Reply-To: <3CACB31E.6070308@bcm.tmc.edu>
References: <3CACB31E.6070308@bcm.tmc.edu>
Message-ID: <20020405070601.GA3162@galois.globalphasing.com>
Dear Alex,
yes, there was a typo in this file. The current version of Sushi (3.0.7)
(available on our WWW site through
http://www.globalphasing.com/sharp/download/index.html) fixes this
(among a few other things). So please update your installation, which
is done by
1. download a new sushi.tar.gz and installSHARP to your $BDG_home
directory
2. stop your running httpd:
% cd $BDG_home
% adm/bin/kill_server
3. update installation:
% ./installSHARP -u
4. restart server:
% adm/bin/restart_server
That should do the trick.
Cheers
Clemens
PS: if your user name/password has expired for the download pages,
please let us know and we'll send you the current one.
On Thu, Apr 04, 2002 at 02:10:06PM -0600, Alexei Nickitenko wrote:
> Dear Clemens,
>
> My autoSHARP give me the next error when it's trying to delete missing
> c-sites?
>
>
> 4. Removing missing C-SITES
>
> syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line
> 88, near "+ }"
> Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted
> due to compilation errors.
>
>
> Thanks,
>
> Alex
--
***************************************************************
* Clemens Vonrhein, Ph.D. vonrhein@GlobalPhasing.com
*
* Global Phasing Ltd.
* Sheraton House, Castle Park Tel: +44-(0)1223-353033
* Cambridge CB3 0AX, UK Fax: +44-(0)1223-366889
*--------------------------------------------------------------
* BUSTER Development Group (http://www.globalphasing.com)
***************************************************************
From derek.logan@mbfys.lu.se Mon Apr 15 15:32:55 2002
From: derek.logan@mbfys.lu.se (Derek Logan)
Date: Mon, 15 Apr 2002 16:32:55 +0200
Subject: [sharp-discuss] runsharp.sh and resolution
Message-ID:
Hi,
I have two questions relating to SHARP, one administrative and one
user-oriented:
1) If I try to run SHARP based on a previous run, I get no log file,
only STDERR with content:
/usr/local/xtal/sharp/bin/sharp/runsharp.sh: pwd: read error in ..
/logfiles/MAD.8: No such file or directory
The second line is obviously a consequence of a variable not being set
by pwd, but why pwd in runsharp.sh doesn't work, I have no idea. SHARP
runs no problem when called by autoSHARP (as witness the fact that I had
some old runs to base new ones on!)
2) Is there an easy way to change the resolution of the phase
improvement procedures? Our input file goes to significantly higher
resolution than the acceptable FOM. I tried editing for_solo.asc, like
one used to do with the old SHARP, but this doesn't seem to help. Of
course one can go and cut off the input MTZ file at lower resolution,
but this is not so convenient.
From vkabale@uoft02.utoledo.edu Tue Apr 2 21:21:04 2002
From: vkabale@uoft02.utoledo.edu (Venkataraman Kabaleeswaran)
Date: Tue, 02 Apr 2002 15:21:04 -0500
Subject: [sharp-discuss] -residual map using CCP4 unofficial version 4L1
Message-ID: <01KG3CU62YS4001F28@uoft02.utoledo.edu>
hi clemens
After the installation of latest release - Sushi 3.0.7 is working fine
without any error message for CCP4 - 4L1 version.
thanks
Venkataraman
From alexein@bcm.tmc.edu Thu Apr 4 21:10:06 2002
From: alexein@bcm.tmc.edu (Alexei Nickitenko)
Date: Thu, 04 Apr 2002 14:10:06 -0600
Subject: [sharp-discuss] syntax error at CsiteDel.pl
Message-ID: <3CACB31E.6070308@bcm.tmc.edu>
--------------090904030101010005090900
Content-Type: text/plain; charset=us-ascii; format=flowed
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900
Content-Type: text/html; charset=us-ascii
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900--
From vonrhein@globalphasing.com Fri Apr 5 08:06:02 2002
From: vonrhein@globalphasing.com (Clemens Vonrhein)
Date: Fri, 5 Apr 2002 08:06:02 +0100
Subject: [sharp-discuss] syntax error at CsiteDel.pl
In-Reply-To: <3CACB31E.6070308@bcm.tmc.edu>
References: <3CACB31E.6070308@bcm.tmc.edu>
Message-ID: <20020405070601.GA3162@galois.globalphasing.com>
Dear Alex,
yes, there was a typo in this file. The current version of Sushi (3.0.7)
(available on our WWW site through
http://www.globalphasing.com/sharp/download/index.html) fixes this
(among a few other things). So please update your installation, which
is done by
1. download a new sushi.tar.gz and installSHARP to your $BDG_home
directory
2. stop your running httpd:
% cd $BDG_home
% adm/bin/kill_server
3. update installation:
% ./installSHARP -u
4. restart server:
% adm/bin/restart_server
That should do the trick.
Cheers
Clemens
PS: if your user name/password has expired for the download pages,
please let us know and we'll send you the current one.
On Thu, Apr 04, 2002 at 02:10:06PM -0600, Alexei Nickitenko wrote:
> Dear Clemens,
>
> My autoSHARP give me the next error when it's trying to delete missing
> c-sites?
>
>
> 4. Removing missing C-SITES
>
> syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line
> 88, near "+ }"
> Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted
> due to compilation errors.
>
>
> Thanks,
>
> Alex
--
***************************************************************
* Clemens Vonrhein, Ph.D. vonrhein@GlobalPhasing.com
*
* Global Phasing Ltd.
* Sheraton House, Castle Park Tel: +44-(0)1223-353033
* Cambridge CB3 0AX, UK Fax: +44-(0)1223-366889
*--------------------------------------------------------------
* BUSTER Development Group (http://www.globalphasing.com)
***************************************************************
From derek.logan@mbfys.lu.se Mon Apr 15 15:32:55 2002
From: derek.logan@mbfys.lu.se (Derek Logan)
Date: Mon, 15 Apr 2002 16:32:55 +0200
Subject: [sharp-discuss] runsharp.sh and resolution
Message-ID:
Hi,
I have two questions relating to SHARP, one administrative and one
user-oriented:
1) If I try to run SHARP based on a previous run, I get no log file,
only STDERR with content:
/usr/local/xtal/sharp/bin/sharp/runsharp.sh: pwd: read error in ..
/logfiles/MAD.8: No such file or directory
The second line is obviously a consequence of a variable not being set
by pwd, but why pwd in runsharp.sh doesn't work, I have no idea. SHARP
runs no problem when called by autoSHARP (as witness the fact that I had
some old runs to base new ones on!)
2) Is there an easy way to change the resolution of the phase
improvement procedures? Our input file goes to significantly higher
resolution than the acceptable FOM. I tried editing for_solo.asc, like
one used to do with the old SHARP, but this doesn't seem to help. Of
course one can go and cut off the input MTZ file at lower resolution,
but this is not so convenient.
From vkabale@uoft02.utoledo.edu Tue Apr 2 21:21:04 2002
From: vkabale@uoft02.utoledo.edu (Venkataraman Kabaleeswaran)
Date: Tue, 02 Apr 2002 15:21:04 -0500
Subject: [sharp-discuss] -residual map using CCP4 unofficial version 4L1
Message-ID: <01KG3CU62YS4001F28@uoft02.utoledo.edu>
hi clemens
After the installation of latest release - Sushi 3.0.7 is working fine
without any error message for CCP4 - 4L1 version.
thanks
Venkataraman
From alexein@bcm.tmc.edu Thu Apr 4 21:10:06 2002
From: alexein@bcm.tmc.edu (Alexei Nickitenko)
Date: Thu, 04 Apr 2002 14:10:06 -0600
Subject: [sharp-discuss] syntax error at CsiteDel.pl
Message-ID: <3CACB31E.6070308@bcm.tmc.edu>
--------------090904030101010005090900
Content-Type: text/plain; charset=us-ascii; format=flowed
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900
Content-Type: text/html; charset=us-ascii
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900--
From vonrhein@globalphasing.com Fri Apr 5 08:06:02 2002
From: vonrhein@globalphasing.com (Clemens Vonrhein)
Date: Fri, 5 Apr 2002 08:06:02 +0100
Subject: [sharp-discuss] syntax error at CsiteDel.pl
In-Reply-To: <3CACB31E.6070308@bcm.tmc.edu>
References: <3CACB31E.6070308@bcm.tmc.edu>
Message-ID: <20020405070601.GA3162@galois.globalphasing.com>
Dear Alex,
yes, there was a typo in this file. The current version of Sushi (3.0.7)
(available on our WWW site through
http://www.globalphasing.com/sharp/download/index.html) fixes this
(among a few other things). So please update your installation, which
is done by
1. download a new sushi.tar.gz and installSHARP to your $BDG_home
directory
2. stop your running httpd:
% cd $BDG_home
% adm/bin/kill_server
3. update installation:
% ./installSHARP -u
4. restart server:
% adm/bin/restart_server
That should do the trick.
Cheers
Clemens
PS: if your user name/password has expired for the download pages,
please let us know and we'll send you the current one.
On Thu, Apr 04, 2002 at 02:10:06PM -0600, Alexei Nickitenko wrote:
> Dear Clemens,
>
> My autoSHARP give me the next error when it's trying to delete missing
> c-sites?
>
>
> 4. Removing missing C-SITES
>
> syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line
> 88, near "+ }"
> Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted
> due to compilation errors.
>
>
> Thanks,
>
> Alex
--
***************************************************************
* Clemens Vonrhein, Ph.D. vonrhein@GlobalPhasing.com
*
* Global Phasing Ltd.
* Sheraton House, Castle Park Tel: +44-(0)1223-353033
* Cambridge CB3 0AX, UK Fax: +44-(0)1223-366889
*--------------------------------------------------------------
* BUSTER Development Group (http://www.globalphasing.com)
***************************************************************
From derek.logan@mbfys.lu.se Mon Apr 15 15:32:55 2002
From: derek.logan@mbfys.lu.se (Derek Logan)
Date: Mon, 15 Apr 2002 16:32:55 +0200
Subject: [sharp-discuss] runsharp.sh and resolution
Message-ID:
Hi,
I have two questions relating to SHARP, one administrative and one
user-oriented:
1) If I try to run SHARP based on a previous run, I get no log file,
only STDERR with content:
/usr/local/xtal/sharp/bin/sharp/runsharp.sh: pwd: read error in ..
/logfiles/MAD.8: No such file or directory
The second line is obviously a consequence of a variable not being set
by pwd, but why pwd in runsharp.sh doesn't work, I have no idea. SHARP
runs no problem when called by autoSHARP (as witness the fact that I had
some old runs to base new ones on!)
2) Is there an easy way to change the resolution of the phase
improvement procedures? Our input file goes to significantly higher
resolution than the acceptable FOM. I tried editing for_solo.asc, like
one used to do with the old SHARP, but this doesn't seem to help. Of
course one can go and cut off the input MTZ file at lower resolution,
but this is not so convenient.
From vkabale@uoft02.utoledo.edu Tue Apr 2 21:21:04 2002
From: vkabale@uoft02.utoledo.edu (Venkataraman Kabaleeswaran)
Date: Tue, 02 Apr 2002 15:21:04 -0500
Subject: [sharp-discuss] -residual map using CCP4 unofficial version 4L1
Message-ID: <01KG3CU62YS4001F28@uoft02.utoledo.edu>
hi clemens
After the installation of latest release - Sushi 3.0.7 is working fine
without any error message for CCP4 - 4L1 version.
thanks
Venkataraman
From alexein@bcm.tmc.edu Thu Apr 4 21:10:06 2002
From: alexein@bcm.tmc.edu (Alexei Nickitenko)
Date: Thu, 04 Apr 2002 14:10:06 -0600
Subject: [sharp-discuss] syntax error at CsiteDel.pl
Message-ID: <3CACB31E.6070308@bcm.tmc.edu>
--------------090904030101010005090900
Content-Type: text/plain; charset=us-ascii; format=flowed
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900
Content-Type: text/html; charset=us-ascii
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900--
From vonrhein@globalphasing.com Fri Apr 5 08:06:02 2002
From: vonrhein@globalphasing.com (Clemens Vonrhein)
Date: Fri, 5 Apr 2002 08:06:02 +0100
Subject: [sharp-discuss] syntax error at CsiteDel.pl
In-Reply-To: <3CACB31E.6070308@bcm.tmc.edu>
References: <3CACB31E.6070308@bcm.tmc.edu>
Message-ID: <20020405070601.GA3162@galois.globalphasing.com>
Dear Alex,
yes, there was a typo in this file. The current version of Sushi (3.0.7)
(available on our WWW site through
http://www.globalphasing.com/sharp/download/index.html) fixes this
(among a few other things). So please update your installation, which
is done by
1. download a new sushi.tar.gz and installSHARP to your $BDG_home
directory
2. stop your running httpd:
% cd $BDG_home
% adm/bin/kill_server
3. update installation:
% ./installSHARP -u
4. restart server:
% adm/bin/restart_server
That should do the trick.
Cheers
Clemens
PS: if your user name/password has expired for the download pages,
please let us know and we'll send you the current one.
On Thu, Apr 04, 2002 at 02:10:06PM -0600, Alexei Nickitenko wrote:
> Dear Clemens,
>
> My autoSHARP give me the next error when it's trying to delete missing
> c-sites?
>
>
> 4. Removing missing C-SITES
>
> syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line
> 88, near "+ }"
> Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted
> due to compilation errors.
>
>
> Thanks,
>
> Alex
--
***************************************************************
* Clemens Vonrhein, Ph.D. vonrhein@GlobalPhasing.com
*
* Global Phasing Ltd.
* Sheraton House, Castle Park Tel: +44-(0)1223-353033
* Cambridge CB3 0AX, UK Fax: +44-(0)1223-366889
*--------------------------------------------------------------
* BUSTER Development Group (http://www.globalphasing.com)
***************************************************************
From derek.logan@mbfys.lu.se Mon Apr 15 15:32:55 2002
From: derek.logan@mbfys.lu.se (Derek Logan)
Date: Mon, 15 Apr 2002 16:32:55 +0200
Subject: [sharp-discuss] runsharp.sh and resolution
Message-ID:
Hi,
I have two questions relating to SHARP, one administrative and one
user-oriented:
1) If I try to run SHARP based on a previous run, I get no log file,
only STDERR with content:
/usr/local/xtal/sharp/bin/sharp/runsharp.sh: pwd: read error in ..
/logfiles/MAD.8: No such file or directory
The second line is obviously a consequence of a variable not being set
by pwd, but why pwd in runsharp.sh doesn't work, I have no idea. SHARP
runs no problem when called by autoSHARP (as witness the fact that I had
some old runs to base new ones on!)
2) Is there an easy way to change the resolution of the phase
improvement procedures? Our input file goes to significantly higher
resolution than the acceptable FOM. I tried editing for_solo.asc, like
one used to do with the old SHARP, but this doesn't seem to help. Of
course one can go and cut off the input MTZ file at lower resolution,
but this is not so convenient.
From vkabale@uoft02.utoledo.edu Tue Apr 2 21:21:04 2002
From: vkabale@uoft02.utoledo.edu (Venkataraman Kabaleeswaran)
Date: Tue, 02 Apr 2002 15:21:04 -0500
Subject: [sharp-discuss] -residual map using CCP4 unofficial version 4L1
Message-ID: <01KG3CU62YS4001F28@uoft02.utoledo.edu>
hi clemens
After the installation of latest release - Sushi 3.0.7 is working fine
without any error message for CCP4 - 4L1 version.
thanks
Venkataraman
From alexein@bcm.tmc.edu Thu Apr 4 21:10:06 2002
From: alexein@bcm.tmc.edu (Alexei Nickitenko)
Date: Thu, 04 Apr 2002 14:10:06 -0600
Subject: [sharp-discuss] syntax error at CsiteDel.pl
Message-ID: <3CACB31E.6070308@bcm.tmc.edu>
--------------090904030101010005090900
Content-Type: text/plain; charset=us-ascii; format=flowed
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900
Content-Type: text/html; charset=us-ascii
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900--
From vonrhein@globalphasing.com Fri Apr 5 08:06:02 2002
From: vonrhein@globalphasing.com (Clemens Vonrhein)
Date: Fri, 5 Apr 2002 08:06:02 +0100
Subject: [sharp-discuss] syntax error at CsiteDel.pl
In-Reply-To: <3CACB31E.6070308@bcm.tmc.edu>
References: <3CACB31E.6070308@bcm.tmc.edu>
Message-ID: <20020405070601.GA3162@galois.globalphasing.com>
Dear Alex,
yes, there was a typo in this file. The current version of Sushi (3.0.7)
(available on our WWW site through
http://www.globalphasing.com/sharp/download/index.html) fixes this
(among a few other things). So please update your installation, which
is done by
1. download a new sushi.tar.gz and installSHARP to your $BDG_home
directory
2. stop your running httpd:
% cd $BDG_home
% adm/bin/kill_server
3. update installation:
% ./installSHARP -u
4. restart server:
% adm/bin/restart_server
That should do the trick.
Cheers
Clemens
PS: if your user name/password has expired for the download pages,
please let us know and we'll send you the current one.
On Thu, Apr 04, 2002 at 02:10:06PM -0600, Alexei Nickitenko wrote:
> Dear Clemens,
>
> My autoSHARP give me the next error when it's trying to delete missing
> c-sites?
>
>
> 4. Removing missing C-SITES
>
> syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line
> 88, near "+ }"
> Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted
> due to compilation errors.
>
>
> Thanks,
>
> Alex
--
***************************************************************
* Clemens Vonrhein, Ph.D. vonrhein@GlobalPhasing.com
*
* Global Phasing Ltd.
* Sheraton House, Castle Park Tel: +44-(0)1223-353033
* Cambridge CB3 0AX, UK Fax: +44-(0)1223-366889
*--------------------------------------------------------------
* BUSTER Development Group (http://www.globalphasing.com)
***************************************************************
From derek.logan@mbfys.lu.se Mon Apr 15 15:32:55 2002
From: derek.logan@mbfys.lu.se (Derek Logan)
Date: Mon, 15 Apr 2002 16:32:55 +0200
Subject: [sharp-discuss] runsharp.sh and resolution
Message-ID:
Hi,
I have two questions relating to SHARP, one administrative and one
user-oriented:
1) If I try to run SHARP based on a previous run, I get no log file,
only STDERR with content:
/usr/local/xtal/sharp/bin/sharp/runsharp.sh: pwd: read error in ..
/logfiles/MAD.8: No such file or directory
The second line is obviously a consequence of a variable not being set
by pwd, but why pwd in runsharp.sh doesn't work, I have no idea. SHARP
runs no problem when called by autoSHARP (as witness the fact that I had
some old runs to base new ones on!)
2) Is there an easy way to change the resolution of the phase
improvement procedures? Our input file goes to significantly higher
resolution than the acceptable FOM. I tried editing for_solo.asc, like
one used to do with the old SHARP, but this doesn't seem to help. Of
course one can go and cut off the input MTZ file at lower resolution,
but this is not so convenient.
From vkabale@uoft02.utoledo.edu Tue Apr 2 21:21:04 2002
From: vkabale@uoft02.utoledo.edu (Venkataraman Kabaleeswaran)
Date: Tue, 02 Apr 2002 15:21:04 -0500
Subject: [sharp-discuss] -residual map using CCP4 unofficial version 4L1
Message-ID: <01KG3CU62YS4001F28@uoft02.utoledo.edu>
hi clemens
After the installation of latest release - Sushi 3.0.7 is working fine
without any error message for CCP4 - 4L1 version.
thanks
Venkataraman
From alexein@bcm.tmc.edu Thu Apr 4 21:10:06 2002
From: alexein@bcm.tmc.edu (Alexei Nickitenko)
Date: Thu, 04 Apr 2002 14:10:06 -0600
Subject: [sharp-discuss] syntax error at CsiteDel.pl
Message-ID: <3CACB31E.6070308@bcm.tmc.edu>
--------------090904030101010005090900
Content-Type: text/plain; charset=us-ascii; format=flowed
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900
Content-Type: text/html; charset=us-ascii
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900--
From vonrhein@globalphasing.com Fri Apr 5 08:06:02 2002
From: vonrhein@globalphasing.com (Clemens Vonrhein)
Date: Fri, 5 Apr 2002 08:06:02 +0100
Subject: [sharp-discuss] syntax error at CsiteDel.pl
In-Reply-To: <3CACB31E.6070308@bcm.tmc.edu>
References: <3CACB31E.6070308@bcm.tmc.edu>
Message-ID: <20020405070601.GA3162@galois.globalphasing.com>
Dear Alex,
yes, there was a typo in this file. The current version of Sushi (3.0.7)
(available on our WWW site through
http://www.globalphasing.com/sharp/download/index.html) fixes this
(among a few other things). So please update your installation, which
is done by
1. download a new sushi.tar.gz and installSHARP to your $BDG_home
directory
2. stop your running httpd:
% cd $BDG_home
% adm/bin/kill_server
3. update installation:
% ./installSHARP -u
4. restart server:
% adm/bin/restart_server
That should do the trick.
Cheers
Clemens
PS: if your user name/password has expired for the download pages,
please let us know and we'll send you the current one.
On Thu, Apr 04, 2002 at 02:10:06PM -0600, Alexei Nickitenko wrote:
> Dear Clemens,
>
> My autoSHARP give me the next error when it's trying to delete missing
> c-sites?
>
>
> 4. Removing missing C-SITES
>
> syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line
> 88, near "+ }"
> Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted
> due to compilation errors.
>
>
> Thanks,
>
> Alex
--
***************************************************************
* Clemens Vonrhein, Ph.D. vonrhein@GlobalPhasing.com
*
* Global Phasing Ltd.
* Sheraton House, Castle Park Tel: +44-(0)1223-353033
* Cambridge CB3 0AX, UK Fax: +44-(0)1223-366889
*--------------------------------------------------------------
* BUSTER Development Group (http://www.globalphasing.com)
***************************************************************
From derek.logan@mbfys.lu.se Mon Apr 15 15:32:55 2002
From: derek.logan@mbfys.lu.se (Derek Logan)
Date: Mon, 15 Apr 2002 16:32:55 +0200
Subject: [sharp-discuss] runsharp.sh and resolution
Message-ID:
Hi,
I have two questions relating to SHARP, one administrative and one
user-oriented:
1) If I try to run SHARP based on a previous run, I get no log file,
only STDERR with content:
/usr/local/xtal/sharp/bin/sharp/runsharp.sh: pwd: read error in ..
/logfiles/MAD.8: No such file or directory
The second line is obviously a consequence of a variable not being set
by pwd, but why pwd in runsharp.sh doesn't work, I have no idea. SHARP
runs no problem when called by autoSHARP (as witness the fact that I had
some old runs to base new ones on!)
2) Is there an easy way to change the resolution of the phase
improvement procedures? Our input file goes to significantly higher
resolution than the acceptable FOM. I tried editing for_solo.asc, like
one used to do with the old SHARP, but this doesn't seem to help. Of
course one can go and cut off the input MTZ file at lower resolution,
but this is not so convenient.
From vkabale@uoft02.utoledo.edu Tue Apr 2 21:21:04 2002
From: vkabale@uoft02.utoledo.edu (Venkataraman Kabaleeswaran)
Date: Tue, 02 Apr 2002 15:21:04 -0500
Subject: [sharp-discuss] -residual map using CCP4 unofficial version 4L1
Message-ID: <01KG3CU62YS4001F28@uoft02.utoledo.edu>
hi clemens
After the installation of latest release - Sushi 3.0.7 is working fine
without any error message for CCP4 - 4L1 version.
thanks
Venkataraman
From alexein@bcm.tmc.edu Thu Apr 4 21:10:06 2002
From: alexein@bcm.tmc.edu (Alexei Nickitenko)
Date: Thu, 04 Apr 2002 14:10:06 -0600
Subject: [sharp-discuss] syntax error at CsiteDel.pl
Message-ID: <3CACB31E.6070308@bcm.tmc.edu>
--------------090904030101010005090900
Content-Type: text/plain; charset=us-ascii; format=flowed
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900
Content-Type: text/html; charset=us-ascii
Content-Transfer-Encoding: 7bit
Dear Clemens,
My autoSHARP give me the next error when it's trying to delete missing
c-sites?
4. Removing missing C-SITES
syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line 88, near "+ }"
Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted due to compilation errors.
Thanks,
Alex
--------------090904030101010005090900--
From vonrhein@globalphasing.com Fri Apr 5 08:06:02 2002
From: vonrhein@globalphasing.com (Clemens Vonrhein)
Date: Fri, 5 Apr 2002 08:06:02 +0100
Subject: [sharp-discuss] syntax error at CsiteDel.pl
In-Reply-To: <3CACB31E.6070308@bcm.tmc.edu>
References: <3CACB31E.6070308@bcm.tmc.edu>
Message-ID: <20020405070601.GA3162@galois.globalphasing.com>
Dear Alex,
yes, there was a typo in this file. The current version of Sushi (3.0.7)
(available on our WWW site through
http://www.globalphasing.com/sharp/download/index.html) fixes this
(among a few other things). So please update your installation, which
is done by
1. download a new sushi.tar.gz and installSHARP to your $BDG_home
directory
2. stop your running httpd:
% cd $BDG_home
% adm/bin/kill_server
3. update installation:
% ./installSHARP -u
4. restart server:
% adm/bin/restart_server
That should do the trick.
Cheers
Clemens
PS: if your user name/password has expired for the download pages,
please let us know and we'll send you the current one.
On Thu, Apr 04, 2002 at 02:10:06PM -0600, Alexei Nickitenko wrote:
> Dear Clemens,
>
> My autoSHARP give me the next error when it's trying to delete missing
> c-sites?
>
>
> 4. Removing missing C-SITES
>
> syntax error at /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl line
> 88, near "+ }"
> Execution of /disk2/software/qci/sharp_new/bin/sharp/CsiteDel.pl aborted
> due to compilation errors.
>
>
> Thanks,
>
> Alex
--
***************************************************************
* Clemens Vonrhein, Ph.D. vonrhein@GlobalPhasing.com
*
* Global Phasing Ltd.
* Sheraton House, Castle Park Tel: +44-(0)1223-353033
* Cambridge CB3 0AX, UK Fax: +44-(0)1223-366889
*--------------------------------------------------------------
* BUSTER Development Group (http://www.globalphasing.com)
***************************************************************
From derek.logan@mbfys.lu.se Mon Apr 15 15:32:55 2002
From: derek.logan@mbfys.lu.se (Derek Logan)
Date: Mon, 15 Apr 2002 16:32:55 +0200
Subject: [sharp-discuss] runsharp.sh and resolution
Message-ID:
Hi,
I have two questions relating to SHARP, one administrative and one
user-oriented:
1) If I try to run SHARP based on a previous run, I get no log file,
only STDERR with content:
/usr/local/xtal/sharp/bin/sharp/runsharp.sh: pwd: read error in ..
/logfiles/MAD.8: No such file or directory
The second line is obviously a consequence of a variable not being set
by pwd, but why pwd in runsharp.sh doesn't work, I have no idea. SHARP
runs no problem when called by autoSHARP (as witness the fact that I had
some old runs to base new ones on!)
2) Is there an easy way to change the resolution of the phase
improvement procedures? Our input file goes to significantly higher
resolution than the acceptable FOM. I tried editing for_solo.asc, like
one used to do with the old SHARP, but this doesn't seem to help. Of
course one can go and cut off the input MTZ file at lower resolution,
but this is not so convenient.