[sharp-discuss] sushi/cgi-bin/map.pl error

Mon, 2 Dec 2002 16:05:21 +0000

Hi,

it seems to me that you configured MAPMAN (Uppsala Software Factory)
wrongly. Have a look at $BDG_home/machines/*/mapman.setup file(s) - or
re-run

  % cd $BDG_home
  % source ./setup.csh
  % adm/bin/mapman-setup

on the machine you're running the httpd on (SERVER).

Also: you can NOT create a symlink between xdlmapman and mapman:
xdlmapman is a VERY OLD graphical version of mapman. And we want to
use it inside a script. So that won't work. Just get the latest RAVE
package from Uppsala and install that. Or just disable calculation of
skeletons from your Preferences (in main SHARP Control Panel).

Also: for residual maps O will pop up empty: you need to

  @map.m

then (in density menu) enlarge the map to cover maybe more than the
default. Try using

  @peak.m

to get some peaks and have a look around them.

Hope that helps.

Cheers

Clemens

On Thu, Nov 28, 2002 at 03:01:36PM -0200, Frederico Moraes Ferreira wrote:
> Hi everybody,
> I am running SHARP 2.0.0 and SUSHI 3.0.14, Perl v5.6.1
> Ive got the the following source code error 
> message when I tried to plot a SHARP 
> eletron-density map.
> 
> <!DOCTYPE HTML PUBLIC "-//IETF//DTD 
> HTML//EN//2.0"><html>
> <head>
>   <title>SHARP error panel</title>
> </head>
> <body bgcolor="#FFFAFO" text="#00000O" 
> alink="#FF0000" link="#0000C0" >
> <CENTER><H1>SHARP error</H1></CENTER>
> <P><HR NOSHADE><P><B>ERROR in 
> /home/sharp/sharp_program/sushi/cgi-bin/map.pl</B>
> <P>The following return values are set:
> <UL>
>   <LI>Child error = 32256
>   <LI>OS error = No such file or directory
>   <LI>Eval error =
> </UL>
> <FONT COLOR="#CC00EE"><P>Program "/usr/local/ccp4" 
> returned an error</FONT>
> <HR NOSHADE><CENTER><B>Program input 
> file</B></CENTER><PRE>
> ! 1.01067
> REad m1 /tmp/16492.dir/EDEN.1.map CCP4
> BOnes SKeletonise m1 1.2 1.0 100
> BOnes COnnectivity /tmp/16492.dir/bones.dat SKEL 10
> QUit
> </PRE>
> <HR NOSHADE><CENTER><B>Program log 
> file</B></CENTER><PRE>
> sh: /usr/local/ccp4-4.2.2/bin: is a directory
> </PRE>
> 
> My error_log is as follow:
> Error in script 
> /home/sharp/sharp_program/sushi/cgi-bin/map.pl - 
> Program /usr/lo
> cal/ccp4: input /tmp/15982.mapman.in output 
> /tmp/15982.mapman.out at /home/sharp
> /sharp_program/lib/libhtml.pl line 1540.
> The input and output files above still was there.
> 
> The O window pop-out when I plot the residual maps 
> but with the object_menu empty.
> 
> Another question. Can I do a sinlink between 
> mapman and xdlmapman??
> Thanks in advance.
> Fred
> 
> 
> 
> 
> _______________________________________________
> sharp-discuss mailing list
> sharp-discuss@globalphasing.com
> http://www.globalphasing.com/mailman/listinfo/sharp-discuss

-- 

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