[sharp-discuss] puzzled!
rams@poori.biochem.uiowa.edu
rams@poori.biochem.uiowa.edu
Thu, 14 Feb 2002 14:37:18 -0600 (CST)
Hello All,
I am trying to refine heavy atom positions - my spacegroup is triclinic.
I therefore assumed (I could be wrong), that I could put my 1st heavy atom
anywhere I wanted. So, I put in the heavyatom in some arbitrary position
(1 ha, one native and 1 derivative). I do not refine the positions of
these heavy atoms. I then throw it into sharps.
The old sharp 1.3.13 throws out my heavy atom site and says that what I am
doing is useless..
Here is the FOM file for example...
The total number of reflexions within the resolution limits is :
10409
The total likelihood for these reflexions is : 0.23563E+05
=============================================
Tables of figures of merit in resolution bins
=============================================
LEGEND :
BINS : resolution bin number
Dmin : lowest resolution of the bin (in Angstrom)
Dmax : highest resolution of the bin (in Angstrom)
Nacen : number of acentric reflexions in this bin
FOMacen : mean 2D figure of merit for acentric reflexions in this bin
Ncen : number of centric reflexions in this bin
FOMcen : mean 2D figure of merit for centric reflexions in this bin
BINS Dmin Dmax Nacen FOMacen Ncen FOMcen
1 25.70 5.54 478 0.12309 0 0.00000
2 5.54 3.96 849 0.06533 0 0.00000
3 3.96 3.25 1093 0.05174 0 0.00000
4 3.25 2.82 1317 0.04768 0 0.00000
5 2.82 2.52 1454 0.04430 0 0.00000
6 2.52 2.31 1609 0.03708 0 0.00000
7 2.31 2.14 1735 0.02766 0 0.00000
8 2.14 2.00 1874 0.02576 0 0.00000
OVERALL 10409 0.04361 0 0.00000
The new sharp 1.4.0 lead me to believe I have it....
WRITING OUTPUT PHASE INFORMATION
The total number of reflexions within the resolution limits is :
10409
The total likelihood for these reflexions is : 0.24670E+05
=============================================
Tables of figures of merit in resolution bins
=============================================
LEGEND :
BINS : resolution bin number
Dmin : lowest resolution of the bin (in Angstrom)
Dmax : highest resolution of the bin (in Angstrom)
Nacen : number of acentric reflexions in this bin
FOMacen : mean 2D figure of merit for acentric reflexions in this bin
Ncen : number of centric reflexions in this bin
FOMcen : mean 2D figure of merit for centric reflexions in this bin
BINS Dmin Dmax Nacen FOMacen Ncen FOMcen
1 25.70 5.54 478 0.57200 0 0.00000
2 5.54 3.96 849 0.47359 0 0.00000
3 3.96 3.25 1093 0.38817 0 0.00000
4 3.25 2.82 1317 0.33723 0 0.00000
5 2.82 2.52 1454 0.29705 0 0.00000
6 2.52 2.31 1609 0.28943 0 0.00000
7 2.31 2.14 1735 0.26151 0 0.00000
8 2.14 2.00 1874 0.26372 0 0.00000
OVERALL 10409 0.32562 0 0.00000
What is wrong....same mtz file, same positions for heavy atoms
etc.. etc...
Thanks.
Rams.