[sharp-discuss] Partial model in SHARP/SOLOMON

Paul Hubbard phubbard@post.its.mcw.edu
Tue, 25 Jun 2002 10:33:04 -0500


Bingo!

Thanks.

Clemens Vonrhein wrote:

> Hi,
>
> you need to name it model_something.pdb (I know, these naming
> conventions are a bit ... well). So rename it to
>
>  /usr15/people/paul1/sharpfiles/datafiles/model_anneal_1.pdb
>
> and it should work.
>
> Clemens
>
> On Tue, Jun 25, 2002 at 10:19:15AM -0500, Paul Hubbard wrote:
> > Hello,
> >
> > Yup. I did all that beforehand, but it still doesn't pop up in the pull
> > down. Here's the file path and details (NOTE: the mtz and hatom files are
> > kept in the same place, and can be read in without any problems):
> >
> > /usr15/people/paul1/sharpfiles/datafiles
> >
> > -rw-r--r--    1 paul     games      284893 Jun 24 17:17 anneal_1.pdb
> >
> > AGS
> >
> > Clemens Vonrhein wrote:
> >
> > > Hi Paul,
> > >
> > > that's odd: you should be able to click on the hyperlink ("including
> > > available partial model") to open a manual wnidow with a (shortish)
> > > explanation. You can see the documentation (same as the one you have
> > > locally installed as part of your SHARP/autoSHARP installation) online
> > > at
> > >
> > >   http://www.globalphasing.com/sharp/manual/denmod2.html#PartialModel
> > >
> > > Make sure to also follow the naming conventions for files as described
> > > e.g. in
> > >
> > >   http://www.globalphasing.com/sharp/manual/autoSHARP1.html#datafiles
> > >
> > > If these are not clear enough please let me know.
> > >
> > > Cheers
> > >
> > > Clemens
> > >
> > > On Mon, Jun 24, 2002 at 05:08:23PM -0500, Paul Hubbard wrote:
> > > > Hello,
> > > >
> > > > Does anyone know how to inculde a partial model in the SOLOMON routine
> > > > for SHARP? I see it as an option, but I can't find the documentation on
> > > > doing it.
> > > >
> > > > Many Thanks
> > > >
> > > > Paul Hubbard
> > > >
> > > > --
> > > > Paul Hubbard
> > > > Dept. of Biochemistry
> > > > Medical College of Wisconsin
> > > > Phone: 414-456 4305
> > > > Fax: 414-456 6510
> > > > URL: iris9.biochem.mcw.edu
> > > >
> > > >
> > > >
> > > >
> > > > _______________________________________________
> > > > sharp-discuss mailing list
> > > > sharp-discuss@globalphasing.com
> > > > http://www.globalphasing.com/mailman/listinfo/sharp-discuss
> > >
> > > --
> > >
> > > ***************************************************************
> > > * Clemens Vonrhein, Ph.D.          vonrhein@GlobalPhasing.com
> > > *
> > > *  Global Phasing Ltd.
> > > *  Sheraton House, Castle Park     Tel: +44-(0)1223-353033
> > > *  Cambridge CB3 0AX, UK           Fax: +44-(0)1223-366889
> > > *--------------------------------------------------------------
> > > * BUSTER Development Group      (http://www.globalphasing.com)
> > > ***************************************************************
> >
> > --
> > Paul Hubbard
> > Dept. of Biochemistry
> > Medical College of Wisconsin
> > Phone: 414-456 4305
> > Fax: 414-456 6510
> > URL: iris9.biochem.mcw.edu
> >
> >
>
> --
>
> ***************************************************************
> * Clemens Vonrhein, Ph.D.          vonrhein@GlobalPhasing.com
> *
> *  Global Phasing Ltd.
> *  Sheraton House, Castle Park     Tel: +44-(0)1223-353033
> *  Cambridge CB3 0AX, UK           Fax: +44-(0)1223-366889
> *--------------------------------------------------------------
> * BUSTER Development Group      (http://www.globalphasing.com)
> ***************************************************************

--
Paul Hubbard
Dept. of Biochemistry
Medical College of Wisconsin
Phone: 414-456 4305
Fax: 414-456 6510
URL: iris9.biochem.mcw.edu