[sharp-discuss] AutoSHARP crashing after Scaleit
Alex Taylor
taylor@bioc09.v19.uthscsa.edu
Thu, 12 Sep 2002 16:43:30 -0500
Dear SHARP Users,
I am running into trouble running AutoSHARP using MAD data. I can
howver successfully solve a SAD problem. The error occurs after scaling
the first two wavelengths as listed below using the IF3-C MAD tutorial
for example:
2.2 second analysis run (exclusion of outliers)
(details) (analysis of scaling) (analysis of scaling)
NOTE : Scale factor = 0.999
NOTE : Gradients should be > 1.0 and intercept = 0
Gradient [probability > 0.9] (centric) = 0.966
(acentric) = 0.765
Intercept [probability > 0.9] (centric) = -0.068
(acentric) = -0.019
R-factor (F) = 0.032
R-factor (I) = 0.040
R-factor (weighted) = 0.044
/usr/progs/osf/sharp_090802/bin/sharp/autoSHARP/scaleit.sh: cannot
create unique file name in "/tmp". awk: Cannot divide by zero. The input
line number is 1. The source line number is 2. awk: Cannot divide by
zero. The input line number is 1. The source line number is 2.
/usr/progs/osf/sharp_090802/bin/sharp/autoSHARP/scaleit.sh: test:
argument expected
I am running the latest SHARP and SUSHI on an Alpha Tru64 5.1A system
with the CCP4 4.2.1 binaries provided by CCP4. Has anyone experienced
these 'cannot create unique file name in "/tmp"' or awk problems and
solved them? I tried assigning different tmp directories for sharp,
ccp4, and binsort files and nothing worked so far.
Thanks,
Alex
--
Alex Taylor, Ph.D.
Department of Biochemistry
University of Texas Health Science Center at San Antonio