[sharp-discuss] Problem with ARP/WARP 6.0

[Clemens Vonrhein]

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Hi Doug,

my first guess is that ARP/wARP 6.0 is not properly configured for the
machine you want to run it on.

For each machine (MASTER) you want to run an ARP/wARP job on you need
a file in the machines database:

  $BDG_home/machines/MACHINENAME/arpwarp.setup

If this file is not there (or incorrect) things can go funny. So the
easiest thing for you to do is to check if these file(s) contain the
correct value for

  warpbin

If not you can either change these by hand or by using the
administrator command "arpwarp-setup".

However, if this is not the problem I would guess that something
already went wrong during the density modification step of the
autoSHARP run that you are apparantly running. Have a look at the
detailed log-file for the density modification step. Any clues there?

Cheers

Clemens


On Fri, Feb 14, 2003 at 03:55:10PM -0500, Doug Bailey wrote:
> Hello Everyone,
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> I have a user who is getting the following error before his job dies.
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> **********************************************************
> ARP/wARP Copyright 1998
> by European Molecular Biology Laboratory
> Authors: Victor S. Lamzin and Anastassis Perrakis
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> basename: too few arguments Try `basename --help' for more information.
> NOTE : best phases (overall correlation on E**2 =3D ) were obtained using=
 the
> inverted hand
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> /home/sharp/bin/sharp/autoSHARP/arpwarp.sh: line 108: cd: HOME not set
> ERROR : unable to find file ".sharprc" in directory ""!
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> ***************************************************************
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> I am running SHARP 2.0.1/Sushi 3.0.15 and ARP_WARP 6.0.
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> Any help, ideas, and/or comments would be appreciated.
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> Thanks,
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> Doug
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> Douglas Bailey          E-mail: baileyd@ncifcrf.gov
> NCI-FCRDC                       Ph: 301-846-5328
> 7th Street, Ft. Detrick         Cell: 301-748-2170
> Frederick, Maryland 21702       Fax: 301-846-6128
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> _______________________________________________
> sharp-discuss mailing list
> sharp-discuss@globalphasing.com
> http://www.globalphasing.com/mailman/listinfo/sharp-discuss

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***************************************************************
* Clemens Vonrhein, Ph.D.     vonrhein AT GlobalPhasing DOT com
*
*  Global Phasing Ltd.
*  Sheraton House, Castle Park     Tel: +44-(0)1223-353033
*  Cambridge CB3 0AX, UK           Fax: +44-(0)1223-366889
*--------------------------------------------------------------
* BUSTER Development Group      (http://www.globalphasing.com)
***************************************************************

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