[sharp-discuss] Error in AutoSharp (Program revise)

[Clemens Vonrhein]

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Dear Mario,

it would surprise me if this was an error in autoSHARP (any MAD job
would have crashed for the last 3 years). Could you give a bit more
information:

 - what operating system are you running the job on? If Linux: what
   version?

 - what (exact) version of CCP4 are you using?

 - how did you compile CCP4?

Could you also have a look at your *.asin file: is there a 'funny'
character in any of the fields?

Cheers

Clemens

On Fri, May 30, 2003 at 02:59:48PM -0700, Mario Amzel wrote:
> I've run AutoSharp with three wavelenghts and I got the following error.
> It appears that the CCP4 script that is generated does not have carriage
> returns at the end of the lines. =20
>=20
> Note: The lines transcribed from the output that contain the error are
> 132 characters wide (not wrapped).
>=20
>=20
> Mario.
>=20
> **************************************************************************
>=20
>=20
> REVISE:  Input column assignment does not match program labels
>=20
>=20
>=20
>=20
> 1###############################################################
>  ###############################################################
>  ###############################################################
>  ### CCP4 4.2: REVISE             version 4.2       : 17/05/02##
>  ###############################################################
>  User:   Run date:  5/30/03  Run time:13:36:25
>=20
>=20
>  Please reference: Collaborative Computational Project, Number 4. 1994.
>  "The CCP4 Suite: Programs for Protein Crystallography". Acta Cryst.
> D50, 760-763.
>=20
>  as well as any specific reference in the program write-up.
>=20
>=20
>=20
>  $TEXT:Reference1: $$ comment $$  "New Techniques of Applying
> Multi-Wavelength Anomalous Scattering Data.",
>  Fan Hai-fu, Woolfson, M.M.,Yao Jia-xing, (1993). Proc. R.Soc. Lond.
>=20
>  $$
>  $SUMMARY :Reference1:  $$ Revise: $$
>  :TEXT:Reference1: $$
>  Data line--- TITL autoSHARP(REVISE) project MAD
>           TITLE OF MTZ FILE REPLACED BY:
>                autoSHARP(REVISE) project
> MAD                                                  =20
>=20
>  Data line--- LABI         FPH1=3DFMIDPEAK SIGFPH1=3DSMIDPEAK       =20
> DPH1=3DDANOPEAK SIGDPH1=3DSANOPEAK LABO FM=3DFM SIGFM=3DSIGFM         FPHM
>  1=3DFPHM_PEAK SIGFPHM1=3DSIGFPHM_PEAK         DPHM1=3DDPHM_PEAK
> SIGDPHM1=3DSIGDPHM_PEAK WAVE 1 LAM 0.98 FPR -4.0 FDP 4.0
>    Neither LABO nor FM recognised
>    OR maybe LABO has been assigned twice
>  REVISE:  Input column assignment does not match program labels
>  Times: User:       0.1s System:    0.0s Elapsed:    0:00
>=20
>=20
>=20
> --=20
>    Dr. Mario Amzel
>    Professor                =20
>    Johns Hopkins Medical School   =20
>    Dept. Biophys. & Biophys. Chem.=20
>    725 N. Wolfe St.               =20
>    Baltimore, Md 21205            =20
>    Telephone (410)955-3955        =20
>    FAX       (410)955-0637
>=20
> _______________________________________________
> sharp-discuss mailing list
> sharp-discuss@globalphasing.com
> http://www.globalphasing.com/mailman/listinfo/sharp-discuss

--=20

***************************************************************
* Clemens Vonrhein, Ph.D.     vonrhein AT GlobalPhasing DOT com
*
*  Global Phasing Ltd.
*  Sheraton House, Castle Park     Tel: +44-(0)1223-353033
*  Cambridge CB3 0AX, UK           Fax: +44-(0)1223-366889
*--------------------------------------------------------------
* BUSTER Development Group      (http://www.globalphasing.com)
***************************************************************

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