[sharp-discuss] ERROR : program terminated in SNOW

[Roni Gordon]

Has anyone encountered this before?

  Building Cycle 8
   Round 1 : 528 peptides in 10 chains. The longest chain comprises 125 peptides.
   Round 2 : 532 peptides in 6 chains. The longest chain comprises 269 peptides.
   Round 3 : 535 peptides in 8 chains. The longest chain comprises 153 peptides.
   Taking results from round 2.
     Chains 6, Residues 526 [out of 522], Connectivity Index 0.97
/opt/sharp-2.2.0/bin/sharp/arpwarp.sh: line 3573: 26209 Segmentation fault      $snow -paramfile=-  >${scr}snow_cycle${CurrentCycle}.${logext} 2>&1 <
ERROR : program terminated in SNOW (see snow_cycle80.log)
final MTZ file copied to wARP_44.2pc.mtz

No error message in snow_cycle80.log:

 ###############################################################################
 ### ARP/wARP Program Suite: SNOW 1.0 S.X. Cohen (2004)                      ###
 ### F77 lib: V. Lamzin                                                      ###
 ############ Copyright 2004 , NKI, A. Perrakis Laboratory #####################
 ###############################################################################


Starting time : Mon Sep 24 14:04:41 2007

************************************* CConfig ***********************************
AbortLevel = 8
AntiBumpFactor = 2.0
ConformationGainThreshold = 1.0
DeleteUsedDummies = 0
DictionaryFilename = /usr/local/xtal/utils/arp_warp_6.1.1/bin/Linux/AAbis.XYZ
IncludeChains = 
MapFilename = ./files/2mfoDfc_cycle80.map
MaxContactDist = 1.7
MessageFilename = ./files/snow_msg_cycle80.txt
MessageLevel = 3
MethionineIsSeleno = 1
MinCScore = 2
MinContactDist = 0.9
NumberOfSequence = 1
PDBInputFilename = ./files/reshuffle_cycle80.pdb
PDBOutputFilename = ./files/snow_cycle80.pdb
ParameterFilename = -
PerformDummiesRejection = 0
PerformReshuffling = 0
PerformSequenceDocking = 1
PerformSideChainFitting = 1
PerformSideChainRefinement = 1
ProgramName = snow
RemoveAllDummies = 0
SequenceFilename = seq.pir
SequenceMultiplicty = 1
SpaceGroup = 19
SymmetryFilename = /usr/local/xtal/utils/arp_warp_6.1.1/bin/Linux/symop.sym
UniformAtomBFactor = 20.681
UniformAtomRadius = 0.74
cell = 58.5800 61.9470 155.0500 90.0000 90.0000 90.0000
*********************************************************************************
Parsing 'experimental' PDB file from : ./files/reshuffle_cycle80.pdb
Number of fragments in the intput : 6
Number of dummy atoms in the input : 3039
Number of ignored residues in the input : 0
After parsing the PDB file, number of dummies is : 3039

Thanks,

Roni