[sharp-discuss] map.pl

David Aragao david.aragao at tcd.ie
Tue Jul 6 13:43:07 CEST 2010


Dear Sharp-discuss list members,

We recently installed sharp and are having problems to open maps. We
can generate a map.pl and see in the first lines of this file a coot
script file followed by what looks to be the map. We cannot opened it
in coot. We can also see a link creation failure in the http error
log. Any advice or pointer would be gratefully appreciated.

Regards,
David

------- sharp httpd 1.3 error log -----
/bin/ln: creating symbolic link
`/tmp/18339.dir/model_XXXX_050710.15_albe_49.3pc.pdb': No such file or
directory
[Tue Jul  6 10:49:05 2010] [error] [client IPADDRESS] script not found
or unable to stat: sharp-2.6/sushi/cgi-bin/css
forrtl: Broken pipe
forrtl: severe (38): error during write, unit -1, file stdout
---------------------------------------------

----------- map.pl head ---------------
Coot.scr0000666000076400001440000000040511414373777011530 0ustar
userxtal(handle-read-ccp4-map "EDEN.1.map" 0)
(set-last-map-colour 0.33 0.66 1.0)
(set-last-map-contour-level 1.0)
(set-last-map-sigma-step 0.1)
(skeletonize-map 0 0)
(set-skeleton-box-size 20.0)
(handle-read-draw-molecule "model_XXXX_test_5_020710.6_albe_49.4pc.pdb")
EDEN.1.map0000666000076400001440000650550411414373777011504 0ustar
userxtal11�HH��

               �B�

                  �B�/HC�B�B�B�

                                   �j5fB�u�� �MAP DAW��? Map from fft











     X,  Y,  Z
              -Y,  X-Y,  Z
                       -X+Y,  -X,  Z

5�ο�R¿������Y�]�V��>�T�>G$X�+���'���ݰ��n�����<�=F?XCr?��8?.,�
(...)
All binary after this.
-----

-- 
David Aragão, Ph. D
Membrane Structural & Functional Biology Group
School of Biochemistry & Immunology
Trinity College Dublin
Office phone: +35318964254
Lab phone:  +35318964257
ICCBM13 - Dublin, Sept. 2010, http://www.iccbm13.ie
ICCBM13 on Facebook, http://tinyurl.com/iccbm13


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