[sharp-discuss] autoSharp unble to utilize ArpWarp
Debajyoti Dutta
debajyoti_dutta47 at rediffmail.com
Fri Jun 28 19:48:53 CEST 2013
Hi Clemens,
Thank you so much. There was a problem with the density modification. I gave a single data containing iodine anomalous signal from home source and provided a partial structure. A new site is coming up but the density modification step there are some problem. For other data it is running well.
I will double check the output and will send you a summery.
Thanks a lot.
Debajyoti
On Wed, 26 Jun 2013 22:15:47 +0530 wrote
>Dear Debajyoti,
On Mon, Jun 24, 2013 at 08:58:43AM -0000, Debajyoti Dutta wrote:
> I did the change in auto_tracing.sh
Good.
> but still it is generatinf different error below
Not good.
> NOTE : using data from run MIR.1 in density modification [2] and automatic model building [1]
>
> (details)
>
> ERROR :-S problems during automatic building problems during automatic
> building - see log file
>
>
> # -----------------------------------------------------------------
> # setting defaults:
> hls ........................ HLA,HLB,HLC,HLD
> fphi ....................... Fcent,PHIcent
> fp ......................... FP,SIGFP
>
> ERROR: unable to MTZDUMP file eden_flat_53.1pc.mtz ERROR: file eden_flat_53.1pc.mtz not found
Something must've happened before that stage: did the
density-modification go ok? Can you look at the 53.1% SOLOMON map
(meaning the eden_flat_53.1pc.mtz file must be there)?
What is the exact sequence of denmod/building steps that are
happening? If possible, can you send us (off-list) a tarball using
cd /where/ever/sharpfiles/logfiles
tar -cvf ~/for_sharp-develop.tar MIR*/LIST*html MIR*/*/LIST*HTML
which might be more revealing?
Cheers
Clemens (for sharp-develop)
--
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* Clemens Vonrhein, Ph.D. vonrhein AT GlobalPhasing DOT com
*
* Global Phasing Ltd.
* Sheraton House, Castle Park
* Cambridge CB3 0AX, UK
*--------------------------------------------------------------
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