Known issues for the SHARP 2.2.0 and SUSHI 3.4.0 release.

Download the patches into a directory, say: $BDG_home/patches, then apply the patches by eg. (one line command):

%patch $BDG_home/bin/sharp/autoSHARP/analyse.sh $BDG_home/patches/q-analyse.sh-protect-against-kappa-zero-1.patch

Note that $BDG_home refers to the directory where SHARP/autoSHARP has been installed.

You can test if a patch has already been applied by using the option: "--dry-run" to the patch program.

1. Combined:

   %patch -p0 --dry-run < $BDG_home/patches/combo-20080120.patch

   %patch -p0 < $BDG_home/patches/combo-20080120.patch

2. analyse.sh:

   %patch $BDG_home/bin/sharp/autoSHARP/analyse.sh $BDG_home/patches/q-analyse.sh-protect-against-kappa-zero-1.patch

3. arpwarp.sh:

   %patch $BDG_home/bin/sharp/arpwarp.sh $BDG_home/patches/q-arpwarp.sh-fixup-rmsbond-1.patch

4. getax.sh:

   %patch $BDG_home/bin/sharp/getax.pl $BDG_home/patches/q-fix-getax.pl-1.patch

5. resid.sh:

   %patch $BDG_home/bin/sharp/autoSHARP/resid.sh $BDG_home/patches/q-resid.sh-fixup-comb-1.patch

Installing on OS X (10.5.x)

If you are installing SHARP/autoSHARP on OS X version 10.5, please do the following prior to running the installscript:

========================================
COMMAND_MODE=legacy /bin/sh

export COMMAND_MODE=legacy
export _POSIX2_VERSION=200111

cd /where/files/are/downloaded
#(source files to have CCP4; shelx[cd]; mapman; arp/wARP in PATH)

sh ./installSHARP -F
#...
========================================

and after installation add the two export lines above to the top of the file: $BDG_home/opsys/Darwin

Last modified: Tue Jan 20 15:55:53 CET 2009