########################################
# Program: needle
# Rundate: Mon 12 Jul 2010 13:02:54
# Commandline: needle
#    [-asequence] /ebi/extserv/old-work/needle-20100712-1302526446.input.1
#    [-bsequence] /ebi/extserv/old-work/needle-20100712-1302526446.input.2
#    -outfile /ebi/extserv/old-work/needle-20100712-1302526446.output
#    -gapopen 10.0
#    -gapextend 0.5
#    -datafile EBLOSUM62
#    -sprotein1
#    -sprotein2
#    -auto
# Align_format: srspair
# Report_file: /ebi/extserv/old-work/needle-20100712-1302526446.output
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: 2a3r_A
# 2: 1aqu_A
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 303
# Identity:     146/303 (48.2%)
# Similarity:   206/303 (68.0%)
# Gaps:          14/303 ( 4.6%)
# Score: 786.5
# 
#
#=======================================

2a3r_A             1 --MELIQDTSRPPLEY------VKGVPLIKYFAEALGPLQSFQARPDDLL     42
                       ||    ||.|  ||      .:||.:.|.|.:....::.|.||||||:
1aqu_A             1 GSME----TSMP--EYYEVFGEFRGVLMDKRFTKYWEDVEMFLARPDDLV     44

2a3r_A            43 INTYPKSGTTWVSQILDMIYQGGDLEKCNRAPIYVRVPFLEVNDPGEPSG     92
                     |.|||||||||:|:::.|||:.||:|||....|:.|:|:||..:....:|
1aqu_A            45 IATYPKSGTTWISEVVYMIYKEGDVEKCKEDAIFNRIPYLECRNEDLING     94

2a3r_A            93 LETLKDTPPPRLIKSHLPLALLPQTLLDQKVKVVYVARNPKDVAVSYYHF    142
                     ::.||:...||::|:|||..|||.:..::..|::|:.||.||||||||:|
1aqu_A            95 IKQLKEKESPRIVKTHLPPKLLPASFWEKNCKMIYLCRNAKDVAVSYYYF    144

2a3r_A           143 HRMEKAHPEPGTWDSFLEKFMAGEVSYGSWYQHVQEWWELSRTHPVLYLF    192
                     ..|..::|.|.::..|:||||.|:|.|||||.||:.|||.|:...||::|
1aqu_A           145 LLMITSYPNPKSFSEFVEKFMQGQVPYGSWYDHVKAWWEKSKNSRVLFMF    194

2a3r_A           193 YEDMKENPKREIQKILEFVGRSLPEETMDFMVQHTSFKEMKKNPMTNYTT    242
                     ||||||:.:||:.|::||:.|....|.:|.::|||||:|||.||.||||.
1aqu_A           195 YEDMKEDIRREVVKLIEFLERKPSAELVDRIIQHTSFQEMKNNPSTNYTM    244

2a3r_A           243 VPQELMDHSISPFMRKGMAGDWKTTFTVAQNERFDADYAEKMAGCSLSFR    292
                     :|:|:|:..:|||||||:.||||..|..|..||||..|.::|..|::.||
1aqu_A           245 MPEEMMNQKVSPFMRKGIIGDWKNHFPEALRERFDEHYKQQMKDCTVKFR    294

2a3r_A           293 SEL    295
                     .||
1aqu_A           295 MEL    297


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