[buster-discuss] problem with pdb2tnt
Thomas Krey
tkrey at pasteur.fr
Wed Dec 5 19:17:35 CET 2012
Dear gphl-team,
I am having a little problem when running buster (since the update on Mountain Lion - Mac OS X 10.8).
I am getting the follloowing error message :
>>> ab_pdb2tnt >>>
>>> ab_pdb2tnt >>> Extracted from file 1/01-BUSTER/Rigid-1/ab_pdb2tnt.log :
>>> ab_pdb2tnt >>>
>>> ab_pdb2tnt >>> ERROR : [pdb2tnt-0014] empty file after running "pdbtools
>>> ab_pdb2tnt >>> --silent -p
>>> ab_pdb2tnt >>> /tmp/tkrey-BUSTER/tkrey-1354713549-ab_pdb2tnt__42754.pdb
>>> ab_pdb2tnt >>> -o
>>> ab_pdb2tnt >>> /tmp/tkrey-BUSTER/tkrey-1354713549-ab_pdb2tnt__42754.pdb1
>>> ab_pdb2tnt >>> -Task GetBestResidue -NoCell"
>>> ab_pdb2tnt >>>
ERROR : [run_buster-0032] problems in ab_pdb2tnt - see
above and 1/01-BUSTER/Rigid-1/ab_pdb2tnt.log
ERROR : [refine-0055] problems in run_buster: see messages
above
Any help would be greatly appreciated.
Thanks so much in advance
Cheers
Thomas
Dr. Thomas Krey
Institut Pasteur
Structural Virology Unit
25-28 Rue du Docteur Roux
75015 Paris
France
tkrey at pasteur.fr
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