[buster-discuss] problem with pdb2tnt

[Andrew Sharff]

On 05/12/12 18:17, Thomas Krey wrote:
> Dear gphl-team,
>
> I am having a little problem when running buster (since the update on Mountain Lion - Mac OS X 10.8).
> I am getting the follloowing error message :
>
>     >>> ab_pdb2tnt >>>
>     >>> ab_pdb2tnt >>> Extracted from file 1/01-BUSTER/Rigid-1/ab_pdb2tnt.log :
>     >>> ab_pdb2tnt >>>
>     >>> ab_pdb2tnt >>> ERROR : [pdb2tnt-0014] empty file after running "pdbtools
>     >>> ab_pdb2tnt >>>         --silent -p
>     >>> ab_pdb2tnt >>>         /tmp/tkrey-BUSTER/tkrey-1354713549-ab_pdb2tnt__42754.pdb
>     >>> ab_pdb2tnt >>>         -o
>     >>> ab_pdb2tnt >>>         /tmp/tkrey-BUSTER/tkrey-1354713549-ab_pdb2tnt__42754.pdb1
>     >>> ab_pdb2tnt >>>         -Task GetBestResidue -NoCell"
>     >>> ab_pdb2tnt >>>
>   

Thomas,

Would it be possible for you to email me the input pdb file that went 
into pdbtools -

/tmp/tkrey-BUSTER/tkrey-1354713549-ab_pdb2tnt__42754.pdb

and also the file

1/01-BUSTER/Rigid-1/ab_pdb2tnt.log


Thanks

Andrew Sharff

>   ERROR : [run_buster-0032] problems in ab_pdb2tnt - see
>           above and 1/01-BUSTER/Rigid-1/ab_pdb2tnt.log
>   
>   
>   ERROR : [refine-0055] problems in run_buster: see messages
>           above
>   
>
> Any help would be greatly appreciated.
>
> Thanks so much in advance
>
> Cheers
> Thomas
>
>
>   
> Dr. Thomas Krey
> Institut Pasteur
> Structural Virology Unit
> 25-28 Rue du Docteur Roux
> 75015 Paris
> France
> tkrey at pasteur.fr
>
>
>
> _______________________________________________
> buster-discuss mailing list
> buster-discuss at globalphasing.com
> https://www.globalphasing.com/mailman/listinfo/buster-discuss

-- 
----------------------------------------------------------
*Dr. Andrew J. Sharff D.Phil**
*Research Scientist / Software Developer
Global Phasing Ltd
Sheraton House
Castle Park
Cambridge CB3 0AX
UK
Tel: +(0)1223 353033
Fax: +(0)1223 366889
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