[buster-discuss] DNA problem
Ed Pozharski
epozh001 at umaryland.edu
Mon May 20 16:30:01 CEST 2013
I am trying to refine a model that contains DNA. PDB file is, I
believe, in v3 nomenclature (DA/DT/DG/DC and O5' etc). Refinement fails
early and I get the warning that the pdb file
"contains a majority of nucleic acids with ribose names O5' not O5*"
It suggests I run pdbvconv, which I do but that says
"v3 DNA names not detected"
and leaves the pdb file unchanged. I didn't try renaming everything
back to v2 manually yet and did not really dig deep into the problem.
My hope is that I am missing something trivial that can be quickly
resolved.
I am running v.2.1.0.
Cheers,
Ed.
--
Edwin Pozharski, PhD, Assistant Professor
University of Maryland, Baltimore
----------------------------------------------
When the great Tao is abandoned, Ideas of "humanitarianism" and
"righteousness" appear.
When intellectualism arises It is accompanied by great hypocrisy.
When there is strife within a family Ideas of "brotherly love" appear.
When nation is plunged into chaos Politicians become "patriotic".
------------------------------ / Lao Tse /
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