[buster-discuss] DNA problem
Nicolas.Foos at afmb.univ-mrs.fr
Tue May 21 22:33:40 CEST 2013
I am not sur that pdbconv can convert 3 in 2.
You can maybe try to use this commande line in linux or mac OS.
sed -e 's/ \(.\)d \(.\)/ \1 \2/' file.pdb > edited_file.pdb
Le 21/05/13 22:00, Ed Pozharski a écrit :
> On 05/21/2013 11:20 AM, Nicolas Foos wrote:
>> The problem come from the nomenclature DA/DT/DG/DC and 05'
>> You have to replace " ' " by * and remove the DA by A. Your pdb is
>> probably in V3.X pdb format. And i think your version of Buster is
>> able to work with version 2.X of pdb format.
> Thanks - I suspected as much. Does anyone reading this board know why
> pdbvconv fails to do the conversion? Seems like this is what it is
> designed to do.
This message has been scanned for viruses and
dangerous content by MailScanner, and is
believed to be clean.
More information about the buster-discuss