[buster-discuss] DNA problem

Nicolas Foos Nicolas.Foos at afmb.univ-mrs.fr
Tue May 21 22:33:40 CEST 2013

I am not sur that pdbconv can convert 3 in 2.

You can maybe try to use this commande line  in linux or mac OS.

sed -e 's/ \(.\)d \(.\)/  \1 \2/' file.pdb > edited_file.pdb

Le 21/05/13 22:00, Ed Pozharski a écrit :
> On 05/21/2013 11:20 AM, Nicolas Foos wrote:
>> The problem come from the nomenclature DA/DT/DG/DC and 05'
>> You have to replace "  '  " by * and remove the DA by A. Your pdb is
>> probably in V3.X pdb format. And i think your version of Buster is
>> able to work with version 2.X of pdb format.
> Thanks - I suspected as much.  Does anyone reading this board know why
> pdbvconv fails to do the conversion?  Seems like this is what it is
> designed to do.

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