[buster-discuss] DNA problem

Martin Moche Martin.Moche at ki.se
Tue May 21 23:12:29 CEST 2013

Hi Ed,

You can upgrade Buster into the latest version that is working on DNA in PDB version 3 format.

Once installed this saves you much time not having to convert between v2 and v3 PDB files.

Best regards,

Head of Protein Crystallography
Protein Science Facility
Karolinska Institutet
+46-8-524 868 43 (office)
+46-73-322 93 27 (mobile)

On May 21, 2013, at 22:18, "Ed Pozharski" <epozh001 at umaryland.edu> wrote:

> On 05/21/2013 11:20 AM, Nicolas Foos wrote:
>> The problem come from the nomenclature DA/DT/DG/DC and 05'
>> You have to replace "  '  " by * and remove the DA by A. Your pdb is 
>> probably in V3.X pdb format. And i think your version of Buster is 
>> able to work with version 2.X of pdb format.
> Thanks - I suspected as much.  Does anyone reading this board know why 
> pdbvconv fails to do the conversion?  Seems like this is what it is 
> designed to do.
> -- 
> Oh, suddenly throwing a giraffe into a volcano to make water is crazy?
>                                                 Julian, King of Lemurs
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