[buster-discuss] pdb2tls issue
Marco Bellinzoni
marco.bellinzoni at pasteur.fr
Wed Jul 8 18:03:02 CEST 2015
Dear all,
I've been encountering a problem with pdb2tls within the latest
autoBUSTER (June 16 release) installation on my Mac Pro running Yosemite
10.10.4. I actually had this problem with my oldest installation as
well. When launching it through
pdb2tls -p refine.pdb -o test.tls
I get:
awk: syntax error at source line 247 in function selection2set
context is
>>> delete( <<< arr)
awk: illegal statement at source line 248 in function selection2set
awk: illegal statement at source line 248 in function selection2set
WARNING : ... something went wrong during extraction of TLS
parameters. See above.
Although this does not make BUSTER to stop, when I run it with the -TLS
option on an input pdb coming out from a previous run with
user-specified TLS groups, BUSTER does not parse the TLS groups in the
input pdb, issues a warning message ("WARNING : unable to extract
available TLS information from REMARK 3 section of....", nevertheless
followed by "NOTE : using automatic TLS definitions based on input PDB
file) and simply carries on with the refinement after applying the
default TLS definitions (one group per chain).
If I supply TLS definitions in an input file after the -TLS option,
everything is fine.
Has anybody else noticed this?
Thanks,
Marco
--
================================
Marco Bellinzoni
Unité de Microbiologie Structurale
Institut Pasteur
25, rue du Dr. Roux
75724 Paris Cedex 15
France
Tel. +33 (0)1 45688608
Fax. +33 (0)1 45688604
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