[buster-discuss] Using aB_deposition_combine before deposition to PDB
Laurent
laurent.maveyraud at ipbs.fr
Sat Feb 11 16:51:48 CET 2023
Hello,
I would like to prepare files for PDB deposition after data processing with autoProc and refinement with buster. I use aB_deposition_combine in order to combine informations from reflection files from autoProc and buster. Howewer, I only get NOTEs about « too few matches found » and no files are produced. See the transcript below. Do I miss something in the usage of the command?
Thanks for any tip!
Have a nice weekend
Laurent
Process_03 is the folder produced by autoProc (-d process_03). Running with -aP ./process_03/Data_1_autoPROC_STARANISO_all.cif does not help.
(base) % aB_deposition_combine -aP ./process_03/ ./refine_08/BUSTER_model.cif ./refine_08/BUSTER_refln.cif
##############################################################################
# This software is licenced to : Centre Natinonal de la Recherche Scientifique, Institut de Pharmacologie et de Biologie Structurale
##############################################################################
##############################################################################
## [aB_deposition_combine] Tool to help combining mmCIF files for PDB deposition
##############################################################################
Copyright (C) 1992-2022 by Global Phasing Limited
All rights reserved.
This software is proprietary to and embodies the confidential
technology of Global Phasing Limited (GPhL). Possession, use,
duplication or dissemination of the software is authorised
only pursuant to a valid written licence from GPhL.
Version: 2.10.4 <2022-06-08 01:47:47>
------------------------------------------------------------------------------
Reference: Bricogne G, Blanc E, Brandl M, Flensburg C, Keller P,
Paciorek W, Roversi P, Sharff A, Smart O, Vonrhein C,
Womack T (2022). BUSTER version 2.10.4. Cambridge, United
Kingdom: Global Phasing Ltd.
Authors: (2020-2021) Bricogne G, Flensburg C, Keller P, Vonrhein C, Wojdyr M
Contact: buster-develop at GlobalPhasing.com
==============================================================================
NOTE : found 32/100 in
./process_03//Data_1_autoPROC_STARANISO_all.cif
(1_staraniso)
NOTE : too few matches found
NOTE : found 0/100 in
./process_03//Data_1_autoPROC_STARANISO_all.cif
(1_staraniso_early)
NOTE : too few matches found
NOTE : found 0/100 in
./process_03//Data_1_autoPROC_STARANISO_all.cif
(1_staraniso_late)
NOTE : too few matches found
NOTE : found 0/100 in
./process_03//Data_2_autoPROC_TRUNCATE_all.cif
(2_truncate)
NOTE : too few matches found
NOTE : found 0/100 in
./process_03//Data_2_autoPROC_TRUNCATE_all.cif
(2_truncate_early)
NOTE : too few matches found
NOTE : found 0/100 in
./process_03//Data_2_autoPROC_TRUNCATE_all.cif
(2_truncate_late)
NOTE : too few matches found
Normal termination (31 sec)
##############################################################################
Laurent Maveyraud
Professor of Biophysics | University of Toulouse | Structural Biophysics Team
Doctoral School Biology - Health - Biotechnologies
+33 5 61 17 54 35 | +33 6 46 04 21 11 | Laurent.Maveyraud at ipbs.fr <mailto:Laurent.maveyraud at ipbs.fr> | L. Maveyraud <https://fr.linkedin.com/in/laurent-maveyraud-8b394a5> | L. Maveyraud <https://orcid.org/0000-0003-4610-8319>
UMR5089 | CNRS - UT3 | 205 Route de Narbonne BP 64182 - 31077 Toulouse Cedex 4
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