[sharp-discuss] Installation Problems

[Clemens Vonrhein]

--3V7upXqbjpZ4EhLz
Content-Type: text/plain; charset=iso-8859-1
Content-Disposition: inline
Content-Transfer-Encoding: 8bit

Hi Alexander,

you're right: a bug in some script (although it's actually
$BDG_home/sushi/cgi-bin/edenmap1.cgi and no
$BDG_home/sushi/cgi-bin/peak.pl). The reason I never noticed it was,
that I never pick peaks in pure electron density maps. The most
important part is to pick peaks in residual maps. But maybe there
actually is a use for picking peaks in a pure SHARP electron density
map?

Anyway, it should work if there is a button ...

I attach a diff file that you can apply

 - either by hand

   - or -

 - by doing:

   % cd $BDG_home/sushi/cgi-bin
   % patch edenmap1.cgi < edenmap1.diff

That should work. Sorry about that.

Cheers

Clemens

On Mon, Feb 04, 2002 at 10:09:58AM +0100, Alexander Schiffer wrote:
> Dear all,
> 
> I installed sharp on Suse Linux  7.2 and most of it works fine - except 
> when I try to do peak picking on an electron density map I get the 
> following error
> 
> ERROR in /sw/xtal/sharp/sushi/cgi-bin/peak.pl
> The following return values are set:
> ·       Child error = 0
> ·       OS error = No such file or directory
> ·       Eval error =
> Error message : File "peak.pl [1]: 
> */sw/xtal/sharp/users/schiffer/sharpfiles/logfiles/sir5x1.1/eden.mtz" not 
> found or not readable
> 
> I checked if the file eden.mtz is there and read/writable and it is.
> 
> Any suggestions?
> 
> Alexander Schiffer
> ____________________________________________________
> Alexander Schiffer			
> 
> Bioanorganische Chemie	Molekulare Membranbiologie	
> Fachbereich Biologie		Max-Planck-Institut für Biophysik
> Universität Konstanz		Frankfurt
> 
> Fon +49 7531 88 2093		Fon +49 69 96769 384
> Fax +49 7531 88 2966		Fax +49 69 96769 423
> 
> 
> _______________________________________________
> sharp-discuss mailing list
> sharp-discuss@globalphasing.com
> http://www.globalphasing.com/mailman/listinfo/sharp-discuss

-- 

***************************************************************
* Clemens Vonrhein, Ph.D.          vonrhein@GlobalPhasing.com
*
*  Global Phasing Ltd.
*  Sheraton House, Castle Park     Tel: +44-(0)1223-353033
*  Cambridge CB3 0AX, UK           Fax: +44-(0)1223-366889
*--------------------------------------------------------------
* BUSTER Development Group      (http://www.globalphasing.com)
***************************************************************

--3V7upXqbjpZ4EhLz
Content-Type: text/plain; charset=us-ascii
Content-Disposition: attachment; filename="edenmap1.diff"

*** edenmap1.cgi-20020116	Wed Jan 16 12:07:44 2002
--- edenmap1.cgi	Mon Feb  4 13:40:14 2002
***************
*** 74,86 ****
  		  if ( $coltype eq "F" ) {
  		      if ( $collab eq "FB"  ) {
  			  $fb = "FB"; $phib="PHIB";
! 			  $select .= "*$BDG_logfiles/$job/eden.mtz:mtz:" .
  			             "ConvertP( \$1, $fb, $phib ):" .
  				     "Electron density:$map\n";
  		      }
  		      if ( $collab eq "FB1" ) {
  			  $fb = "FB1";$phib="PHIB1";
! 			  $select .= "*$BDG_logfiles/$job/eden.mtz:mtz:" .
  			             "ConvertP( \$1, $fb, $phib ):" .
  				     "Electron density [FB1/PHIB1]:$map\n";
  		      }
--- 74,86 ----
  		  if ( $coltype eq "F" ) {
  		      if ( $collab eq "FB"  ) {
  			  $fb = "FB"; $phib="PHIB";
! 			  $select .= "$BDG_logfiles/$job/eden.mtz:mtz:" .
  			             "ConvertP( \$1, $fb, $phib ):" .
  				     "Electron density:$map\n";
  		      }
  		      if ( $collab eq "FB1" ) {
  			  $fb = "FB1";$phib="PHIB1";
! 			  $select .= "$BDG_logfiles/$job/eden.mtz:mtz:" .
  			             "ConvertP( \$1, $fb, $phib ):" .
  				     "Electron density [FB1/PHIB1]:$map\n";
  		      }

--3V7upXqbjpZ4EhLz--