[sharp-discuss] Installation Problems
Clemens Vonrhein
vonrhein@globalphasing.com
Mon, 4 Feb 2002 13:45:49 +0000
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Hi Alexander,
you're right: a bug in some script (although it's actually
$BDG_home/sushi/cgi-bin/edenmap1.cgi and no
$BDG_home/sushi/cgi-bin/peak.pl). The reason I never noticed it was,
that I never pick peaks in pure electron density maps. The most
important part is to pick peaks in residual maps. But maybe there
actually is a use for picking peaks in a pure SHARP electron density
map?
Anyway, it should work if there is a button ...
I attach a diff file that you can apply
- either by hand
- or -
- by doing:
% cd $BDG_home/sushi/cgi-bin
% patch edenmap1.cgi < edenmap1.diff
That should work. Sorry about that.
Cheers
Clemens
On Mon, Feb 04, 2002 at 10:09:58AM +0100, Alexander Schiffer wrote:
> Dear all,
>
> I installed sharp on Suse Linux 7.2 and most of it works fine - except
> when I try to do peak picking on an electron density map I get the
> following error
>
> ERROR in /sw/xtal/sharp/sushi/cgi-bin/peak.pl
> The following return values are set:
> · Child error = 0
> · OS error = No such file or directory
> · Eval error =
> Error message : File "peak.pl [1]:
> */sw/xtal/sharp/users/schiffer/sharpfiles/logfiles/sir5x1.1/eden.mtz" not
> found or not readable
>
> I checked if the file eden.mtz is there and read/writable and it is.
>
> Any suggestions?
>
> Alexander Schiffer
> ____________________________________________________
> Alexander Schiffer
>
> Bioanorganische Chemie Molekulare Membranbiologie
> Fachbereich Biologie Max-Planck-Institut für Biophysik
> Universität Konstanz Frankfurt
>
> Fon +49 7531 88 2093 Fon +49 69 96769 384
> Fax +49 7531 88 2966 Fax +49 69 96769 423
>
>
> _______________________________________________
> sharp-discuss mailing list
> sharp-discuss@globalphasing.com
> http://www.globalphasing.com/mailman/listinfo/sharp-discuss
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***************************************************************
* Clemens Vonrhein, Ph.D. vonrhein@GlobalPhasing.com
*
* Global Phasing Ltd.
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*** edenmap1.cgi-20020116 Wed Jan 16 12:07:44 2002
--- edenmap1.cgi Mon Feb 4 13:40:14 2002
***************
*** 74,86 ****
if ( $coltype eq "F" ) {
if ( $collab eq "FB" ) {
$fb = "FB"; $phib="PHIB";
! $select .= "*$BDG_logfiles/$job/eden.mtz:mtz:" .
"ConvertP( \$1, $fb, $phib ):" .
"Electron density:$map\n";
}
if ( $collab eq "FB1" ) {
$fb = "FB1";$phib="PHIB1";
! $select .= "*$BDG_logfiles/$job/eden.mtz:mtz:" .
"ConvertP( \$1, $fb, $phib ):" .
"Electron density [FB1/PHIB1]:$map\n";
}
--- 74,86 ----
if ( $coltype eq "F" ) {
if ( $collab eq "FB" ) {
$fb = "FB"; $phib="PHIB";
! $select .= "$BDG_logfiles/$job/eden.mtz:mtz:" .
"ConvertP( \$1, $fb, $phib ):" .
"Electron density:$map\n";
}
if ( $collab eq "FB1" ) {
$fb = "FB1";$phib="PHIB1";
! $select .= "$BDG_logfiles/$job/eden.mtz:mtz:" .
"ConvertP( \$1, $fb, $phib ):" .
"Electron density [FB1/PHIB1]:$map\n";
}
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