[sharp-discuss] Installation Problems

[Clemens Vonrhein]

I'm puzzled: doing these changes here on my SUSHI 3.0.2 server cured
that problem and everything is working.

Make sure that lines 77 and 83 in $BDG_home/sushi/cgi-bin/edenmap1.cgi
looks like this:


    $select .= "$BDG_logfiles/$job/eden.mtz:mtz:" .

After patching the edenmap1.cgi file you need to do a 'Reload' on the
'Plot SHARP electron-density maps' page to make sure it's there. If it
still doesn't work: could you send me the following

 - assuming you're using Netscape, when you're on the 'Plot SHARP
   electron-density maps' page click the right mouse button

 - select 'View page source'

 - cut and paste the content of the resulting window into a message
   and send it to me

Cheers

Clemens

On Mon, Feb 04, 2002 at 09:58:31PM +0800, Tommy Wang wrote:
> Applying the patch gave the following results on my system.
> Please advise.
> 
> Thanks !
> 
> 
> 
> 
> Peak list
> 
> Electron density
> 
> User: chernhoe    Project ID: IF3-C.0
>  Checking peaks against cardfiles/end_IF3-C.0.sin
> 
> 
>  
> 
> 
> 
> 
> 
> ERROR in /home/chernhoe/sharp/sushi/cgi-bin/peak.pl 
> 
> Undefined error: The following return values are set: 
> 
> Child error = 2 
> OS error = No such file or directory 
> Eval error = 
> home/chernhoe/sharp/users/chernhoe/sharpfiles/logfiles/IF3-C.0
> 
> 
> 
> 
> 
> Last entries in the http daemon log file:
> 
> 
> 
> [Fri Feb  1 23:18:44 2002] [error] [client 127.0.0.1] File does not exist: 
> /home/chernhoe/sharp/sushi/base/favicon.ico
> Undefined error in /home/chernhoe/sharp/sushi/cgi-bin/map.pl
> Undefined error in /home/chernhoe/sharp/sushi/cgi-bin/map.pl
> [Sat Feb  2 13:04:38 2002] [error] [client 127.0.0.1] File does not exist: 
> /home/chernhoe/sharp/sushi/base/manualhome/chernhoe/sharp/users/chernhoe/sharpfiles/logfiles/IF3-C.0
> Undefined error in /home/chernhoe/sharp/sushi/cgi-bin/map.pl
> Undefined error in /home/chernhoe/sharp/sushi/cgi-bin/map.pl
> Undefined error in /home/chernhoe/sharp/sushi/cgi-bin/map.pl
> Undefined error in /home/chernhoe/sharp/sushi/cgi-bin/map.pl
> Undefined error in /home/chernhoe/sharp/sushi/cgi-bin/map.pl
> [Sun Feb  3 14:24:45 2002] [notice] caught SIGTERM, shutting down
> [Sun Feb  3 15:50:19 2002] [notice] Apache/1.3.22 (Unix) configured -- 
> resuming normal operations
> [Sun Feb  3 15:50:19 2002] [notice] Accept mutex: sysvsem (Default: sysvsem)
> [Mon Feb  4 15:16:14 2002] [notice] caught SIGTERM, shutting down
> [Mon Feb  4 15:17:42 2002] [notice] Apache/1.3.22 (Unix) configured -- 
> resuming normal operations
> [Mon Feb  4 15:17:42 2002] [notice] Accept mutex: sysvsem (Default: sysvsem)
> [Mon Feb  4 20:05:20 2002] [error] [client 127.0.0.1] File does not exist: 
> /home/chernhoe/sharp/sushi/base/favicon.ico
> Error in script /home/chernhoe/sharp/sushi/cgi-bin/peak.pl - File "peak.pl 
> [1]: 
> */home/chernhoe/sharp/users/chernhoe/sharpfiles/logfiles/IF3-C.0/eden.mtz" 
> not found or not readable at /home/chernhoe/sharp/lib/libhtml.pl line 1415.
> Error in script /home/chernhoe/sharp/sushi/cgi-bin/peak.pl - File "peak.pl 
> [1]: 
> */home/chernhoe/sharp/users/chernhoe/sharpfiles/logfiles/IF3-C.0/eden.mtz" 
> not found or not readable at /home/chernhoe/sharp/lib/libhtml.pl line 1415.
> Error in script /home/chernhoe/sharp/sushi/cgi-bin/peak.pl - File "peak.pl 
> [1]: 
> */home/chernhoe/sharp/users/chernhoe/sharpfiles/logfiles/IF3-C.0/eden.mtz" 
> not found or not readable at /home/chernhoe/sharp/lib/libhtml.pl line 1415.
> Unable to determine CCP4 version from file /tmp/4279.dir/peaks.log
> (No such file or directory)
> Undefined error in /home/chernhoe/sharp/sushi/cgi-bin/peak.pl
> Unable to determine CCP4 version from file /tmp/4394.dir/peaks.log
> (No such file or directory)
> Undefined error in /home/chernhoe/sharp/sushi/cgi-bin/peak.pl
> [Mon Feb  4 21:54:50 2002] [notice] caught SIGTERM, shutting down
> [Mon Feb  4 21:54:53 2002] [notice] Apache/1.3.22 (Unix) configured -- 
> resuming normal operations
> [Mon Feb  4 21:54:53 2002] [notice] Accept mutex: sysvsem (Default: sysvsem)
> Unable to determine CCP4 version from file /tmp/4573.dir/peaks.log
> (No such file or directory)

-- 

***************************************************************
* Clemens Vonrhein, Ph.D.          vonrhein@GlobalPhasing.com
*
*  Global Phasing Ltd.
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