[sharp-discuss] OS X, ARP/wARP error in CLIBD_MON

[Clemens Vonrhein]

Dear Jeff,

the ARP/wARP (warpNtrace) implementation in SHARP/autoSHARP sets the
value of CLIBD_MON automatically itself (remember: nothing in your
environment is ever used/picked up by SHARP/autoSHARP). It has
something like

  if [ "X$CLIBD_MON" = "X" ]; then
    if [ -d ${CCP4}/lib/data/monomers ]; then
      CLIBD_MON="${CCP4}/lib/data/monomers/"
    fi
  fi

in there. So it uses the value of $CCP4 from
$BDG_home/machines/YourMachineName/ccp4.setup and expects
${CCP4}/lib/data/monomers/. This is the 'normal' location of these
files.

It seems to me, that you have the files in $CCP4/data/monomers
instead? Is this intended like it? Or is it a CCP4 OsX feature? You
could do the following

  % cd /sw/lib/ccp4-5.0.2
  % mkdir -p lib/data
  % ln -s ../../data/monomers lib/data/monomers

to have both $CCP4/data/monomers and $CCP4/lib/data/monomers - and try
again.


How did you get your CCP4 binaries/installation? From sources? From
official CCP4 binaries? From somewhere else?

Cheers

Clemens

On Mon, Jul 11, 2005 at 03:55:54PM -0400, Wilson, Jeffrey (wilsj9) wrote:
> To preface this post, I am running OS X 10.3.9, and my account is the sharp
> administrator.  I recently upgraded Solve/Resolve to the 2.09 binaries
> (which caused me quite a bit of grief since I needed to upgrade to CCP4
> binaries which are located in different locations from the source compiled
> CCP4).  After fixing my Sharp setup to relect the new locations of files, I
> restarted the server and ran Sharp to the Phase improvement panel.
> When trying to run the automatic model building with arp/warp in Sharp, I
> get the following error:
> 
> 3. Running "arpwarp.sh"
> -----------
> 
> 1. reading warp.par (for ARP/wARP version 6.1)
> 
> ERROR : undefined/wrong variable $CLIBD_MON = ""
> 
> I checked my "printenv" which has CLIBD_MON pointing to
> /sw/lib/ccp4-5.0.2/data/monomers/.  I am running the fink binaries of
> ccp4-5.0.2-101.  ARP/wARP is 6.1.1.  Any ideas?
> 
> Jeff
> 
> 
> 
> 
> _______________________________________________
> sharp-discuss mailing list
> sharp-discuss at globalphasing.com
> http://www.globalphasing.com/mailman/listinfo/sharp-discuss
> 

-- 

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