[sharp-discuss] SHARP/autoSHARP installation on Mac OS X 10.5.6

[Masato Akutsu]

Dear Clemens,

Thank you very much for your response.
When I typed /usr/local/ccp4-6.1.1/lib, it looks fine.

There are the other errors in the Section 6.6 : httpd setup.

> **************************************************************

NOTE : The http deamon is now installed and configured.

Do you want to start the httpd now ? [y]es/[n]o > y
Error: Apache has not been designed to serve pages while
running as root. There are known race conditions that
will allow any local user to read any file on the system.
If you still desire to serve pages as root then
add -DBIG_SECURITY_HOLE to the EXTRA_CFLAGS line in your
src/Configuration file and rebuild the server. It is
strongly suggested that you instead modify the User
directive in your httpd.conf file to list a non-root
user.

ERROR : something went wrong - please see any message above
and also try running the httpd binary
/usr/local/xtal/sharp/helpers/darwin/httpd by hand.
Maybe this binary isn't working on that particular
platform/operating system? See the file(s)
/usr/local/xtal/sharp/helpers/*/httpd.README_GPhL.


NOTE : unable to start httpd on this port - try next one

Continue [y]es/[n]o/[e]xit/[s]kip >
> ***************************************************************


I am afraid I do not know how to run this by hand.
Do I need to do something with
/usr/local/xtal/sharp/helpers/darwin/httpd.README_GPhL ?

Best regards,
Masato


On 27 Mar 2009, at 08:07, Clemens Vonrhein wrote:

> Dear Masato,
>
> On Fri, Mar 27, 2009 at 01:10:23AM +0000, Masato Akutsu wrote:
>> However, I got another WARNING message at the section of server  
>> setup as
>> below.
>> 4. list of directories for
>>     LD_LIBRARY_PATH/DYLD_LIBRARY_PATH variable :
>>     [/usr/local/ccp4-6.1.1/share/XIAROOT/xia2//binaries/mac_386:] >
>> WARNING : invalid answer - try again.
>
> Yes, that installation part is maybe a bit picky: it basically tests
> that each directory in that DYLD_LIBRARY_PATH variable (picked up rom
> your environment) exists. So there are two possible explanations:
>
>  a) the directory
>  /usr/local/ccp4-6.1.1/share/XIAROOT/xia2//binaries/mac_386 doesnt
>  exist
>
>  b) it is confused by that extra ':' at the end
>
>> I would be most grateful if anyone could give me a hint.
>
> Ideally, try fixing your DYLD_LIBRARY_PATH settings before running
> 'installSHARP -F'. I'm not sure where this is set (maybe in one of the
> CCP4 setup scripts?) though.
>
> Or when you get stuck at that point, give it a valid entry like
>
>  /usr/local/ccp4-6.1.1/share/XIAROOT/xia2/binaries/mac_386
>
> (i.e. without the trailing ':').
>
> Cheers
>
> Clemens
>
> -- 
>
> ***************************************************************
> * Clemens Vonrhein, Ph.D.     vonrhein AT GlobalPhasing DOT com
> *
> *  Global Phasing Ltd.
> *  Sheraton House, Castle Park
> *  Cambridge CB3 0AX, UK
> *--------------------------------------------------------------
> * BUSTER Development Group      (http://www.globalphasing.com)
> ***************************************************************

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