[sharp-discuss] Sharp fail on remote submission

[Phil Evans]

I now have it working when I submit it via the Sharp server, but I get the same error if I submit it from ccp4i

I"m not really sure what I have done! I'll investigate KMP_STACKSIZE again some time

Thanks anyway
Phil

On 24 Aug 2010, at 14:07, Claus Flensburg wrote:

> Hi Phil,
> 
> On Thu, Aug 05, 2010 at 10:25:27AM +0100, Phil Evans wrote:
>> 
>> I'm getting crashes in Sharp with the error message such as 
>> 
>> 
>> OMP abort: Unable to set worker thread stack size to 67109888 bytes
>> Try reducing KMP_STACKSIZE or increasing the shell stack limit.
>> 
>> /lmb/home/sharp/sharp-2.6/bin/sharp/runsharp.sh: line 169: 26002 Aborted        
>>         $BDG_exe/sharp
> 
> this looks similar to ones observed for BUSTER ;-|, see eg.
> http://www.globalphasing.com/buster/wiki/index.cgi?BusterInitialFAQ
> 
>> I get this when submitting jobs vis GridEngine to a server, but also
>> if I try to use the runsharp.sh script directly on the "home" machine,
>> even though a Sharp interface submission to the the home machine
>> "Interactive" works OK   
> 
> is KMP_STACKSIZE explicitly set by the GridEngine launcher, and
> do you have it set when directly running runsharp.sh?
> 
>> Anyone got any ideas? Playing around with KMP_STACKSIZE (increasing
>> or decreasing) doesn't help 
> 
> If unsetting it works you can add to $BDG_home/.bdgrc a line like:
> 
> unset KMP_STACKSIZE
> 
> and/or to eg. $BDG_home/machines/.Linux/host.setup.
> 
> Does that work?
> 
> 
> Regards,
> 
> ClAuS