[sharp-discuss] mtz check fails during buster run

[Eugene Valkov]

Thanks Clemens and Miguel - I did indeed upgrade my CCP4 and forgot to
tell Buster about it!

changing the line:

CCP4="/xtal/CCP4/ccp4-6.1.13"

in $BDG_home/machines/*/ccp4.setup

to:

CCP4="/xtal/CCP4/ccp4-6.2.0"

did the trick!

Many thanks
Eugene

2011/8/16 Miguel Ortiz Lombardía <miguel.ortiz-lombardia at afmb.univ-mrs.fr>:
> On 16/08/11 12:39, Eugene Valkov wrote:
>> Dear all,
>>
>> I'm unable to run Buster as it keeps reporting the following error:
>>
>>
>> ERROR : [mtzchk-0012] something wrong with the CCP4
>>         functionality - see
>>         /tmp/eugene-1313487225-mtzchk__20884.log
>>
>>
>> and inspection of the log reveals this:
>>
>>>>>>>> CCP4 library signal ccp4_general:Cannot open environ.def (Error)
>>         raised in ccp4fyp <<<<<<
>>  mtzdump:  Cannot open environ.def
>>  mtzdump:  Cannot open environ.def
>>
>>
>> .....
>>
>>
>> # mtzdump binary:
>> mtzdump is a tracked alias for /xtal/CCP4/ccp4-6.2.0/bin/mtzdump
>> /xtal/CCP4/ccp4-6.2.0/bin/mtzdump
>>        linux-gate.so.1 =>  (0xb7777000)
>>        libm.so.6 => /lib/i386-linux-gnu/libm.so.6 (0xb773b000)
>>        libc.so.6 => /lib/i386-linux-gnu/libc.so.6 (0xb75da000)
>>        /lib/ld-linux.so.2 (0xb7778000)
>>
>>
>>
>> I'm using Buster (version 1.6.0) and CCP4 (version 6.2) on Linux
>> Ubuntu 11.04 32-bit. All the CCP4 programs work fine as far as I can
>> tell, and I can use the data in REFMAC without any issues.
>>
>> Any advice will be much appreciated!
>>
>>
>> Regards,
>> Eugene
>>
>>
>> --
>> Sanger Building
>> Department of Biochemistry
>> University of Cambridge
>> 80 Tennis Court Road
>> Cambridge CB2 1GA
>> UK
>>
>
> Hi Eugene,
>
> Have you upgraded ccp4 to 6.2 after having installed Buster?
> If so, you need to rerun
>
> ccp4_setup
>
> HTH
>
>
> --
> Miguel
>
> Architecture et Fonction des Macromolécules Biologiques (UMR6098)
> CNRS, Universités d'Aix-Marseille I & II
> Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France
> Tel: +33(0) 491 82 55 93
> Fax: +33(0) 491 26 67 20
> mailto:miguel.ortiz-lombardia at afmb.univ-mrs.fr
> http://www.afmb.univ-mrs.fr/Miguel-Ortiz-Lombardia
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>



-- 
Eugene Valkov, D.Phil.
Postdoctoral Research Fellow

Sanger Building
Department of Biochemistry
University of Cambridge
80 Tennis Court Road
Cambridge CB2 1GA
UK

email: ev269 at cam.ac.uk
tel: +44 (0)1223 760 468
fax: +44 (0)1223 766 002
web: http://www-cryst.bioc.cam.ac.uk/groups/hyvonen