[sharp-discuss] Installation of AutoSharp

[Clemens Vonrhein]

Hi Mark,

On Sun, May 03, 2015 at 03:56:14AM +0200, Mark J van Raaij wrote:
> Hi Clemens,
> 
> No, that still does not work, could it be that somehow BDG is not equated with SHARP?

What version (update level) of CCP4 6.5 are you running?

  sfall -i

should return 6.5.008, but can you check?

Cheers

Clemens



> 
> Mark J van Raaij
> mjvanraaij at cnb.csic.es <mailto:mjvanraaij at cnb.csic.es>
> http://www.cnb.csic.es/~mjvanraaij <http://www.cnb.csic.es/~mjvanraaij>
> 
> 
> 
> 
> > On 03 May 2015, at 03:35, Clemens Vonrhein <vonrhein at globalphasing.com> wrote:
> > 
> > Dear Mark,
> > 
> > On Sat, May 02, 2015 at 07:19:47PM +0200, Mark J van Raaij wrote:
> >> I have installed CCP4i and that works properly, it is in /Applications. I also have the Shelx executables in /usr/bin, and they also work (just ran the ShelxCDE pipeline via CCP4i and that went ok, however I would like to see if Autoharp improves on it).
> >> 
> >> I have made a .profile file containing:
> >> source /Applications/ccp4-6.5/bin/ccp4.setup-sh
> >> source /Users/mark/sharp-2.8/setup.sh
> > 
> > Correct.
> > 
> >> Now, if I start CCP4i via the icon, Autosharp remains greyed out.
> > 
> > Yes - because that way of starting CCP4i (via Icon) will possibly not
> > pick up things in your ~/.profile. I don't know how CCP4i is being
> > started through that icon myself - maybe CCP4 can help so that you
> > know where you want to add that
> > 
> >  . /Users/mark/sharp-2.8/setup.sh
> > 
> > (or 'source') line.
> > 
> >> However, if I start CCP4i from an XQuartz window, it is black, but something is still amiss.
> >> When I click on it, it says:
> >> "Can not get environment variable for BDG_home"
> >> and the window does not get drawn.
> > 
> > It is looking for the value of SHARP_home that should point (in your
> > case) to /Users/mark/sharp-2.8:
> > 
> >  export SHARP_home=/Users/mark/sharp-2.8
> >  ccp4i
> > 
> >> Could someone help me fix this?
> > 
> > Does the above fix it for you?
> > 
> > Please also note the info on
> > 
> >  http://www.globalphasing.com/sharp/wiki/index.cgi?Ccp4Problems#ccp465
> > 
> > regarding autoSHARP in CCP4i.
> > 
> >> If possible, could someone also tell me on how to make Autoharp appear not greyed out if I start CCP4i from the icon?
> > 
> > Maybe some Mac/Apple-expert can help there ... ?
> > 
> > Cheers
> > 
> > Clemens
> > 
> >> 
> >> Many thanks in advance,
> >> 
> >> Mark
> >> 
> >> Mark J van Raaij
> >> mjvanraaij at cnb.csic.es <mailto:mjvanraaij at cnb.csic.es>
> >> http://www.cnb.csic.es/~mjvanraaij <http://www.cnb.csic.es/~mjvanraaij>
> >> 
> >> 
> >> 
> >> 
> > 
> >> _______________________________________________
> >> sharp-discuss mailing list
> >> sharp-discuss at globalphasing.com
> >> https://www.globalphasing.com/mailman/listinfo/sharp-discuss
> > 
> > 
> > -- 
> > 
> > ***************************************************************
> > * Clemens Vonrhein, Ph.D.     vonrhein AT GlobalPhasing DOT com
> > *
> > *  Global Phasing Ltd.
> > *  Sheraton House, Castle Park 
> > *  Cambridge CB3 0AX, UK
> > *--------------------------------------------------------------
> > * BUSTER Development Group      (http://www.globalphasing.com)
> > ***************************************************************
> 

-- 

***************************************************************
* Clemens Vonrhein, Ph.D.     vonrhein AT GlobalPhasing DOT com
*
*  Global Phasing Ltd.
*  Sheraton House, Castle Park 
*  Cambridge CB3 0AX, UK
*--------------------------------------------------------------
* BUSTER Development Group      (http://www.globalphasing.com)
***************************************************************