[sharp-discuss] Installation of AutoSharp

[Mark J van Raaij]

Hi Clemens,

No, that still does not work, could it be that somehow BDG is not equated with SHARP?

Mark J van Raaij
mjvanraaij at cnb.csic.es <mailto:mjvanraaij at cnb.csic.es>
http://www.cnb.csic.es/~mjvanraaij <http://www.cnb.csic.es/~mjvanraaij>




> On 03 May 2015, at 03:35, Clemens Vonrhein <vonrhein at globalphasing.com> wrote:
> 
> Dear Mark,
> 
> On Sat, May 02, 2015 at 07:19:47PM +0200, Mark J van Raaij wrote:
>> I have installed CCP4i and that works properly, it is in /Applications. I also have the Shelx executables in /usr/bin, and they also work (just ran the ShelxCDE pipeline via CCP4i and that went ok, however I would like to see if Autoharp improves on it).
>> 
>> I have made a .profile file containing:
>> source /Applications/ccp4-6.5/bin/ccp4.setup-sh
>> source /Users/mark/sharp-2.8/setup.sh
> 
> Correct.
> 
>> Now, if I start CCP4i via the icon, Autosharp remains greyed out.
> 
> Yes - because that way of starting CCP4i (via Icon) will possibly not
> pick up things in your ~/.profile. I don't know how CCP4i is being
> started through that icon myself - maybe CCP4 can help so that you
> know where you want to add that
> 
>  . /Users/mark/sharp-2.8/setup.sh
> 
> (or 'source') line.
> 
>> However, if I start CCP4i from an XQuartz window, it is black, but something is still amiss.
>> When I click on it, it says:
>> "Can not get environment variable for BDG_home"
>> and the window does not get drawn.
> 
> It is looking for the value of SHARP_home that should point (in your
> case) to /Users/mark/sharp-2.8:
> 
>  export SHARP_home=/Users/mark/sharp-2.8
>  ccp4i
> 
>> Could someone help me fix this?
> 
> Does the above fix it for you?
> 
> Please also note the info on
> 
>  http://www.globalphasing.com/sharp/wiki/index.cgi?Ccp4Problems#ccp465
> 
> regarding autoSHARP in CCP4i.
> 
>> If possible, could someone also tell me on how to make Autoharp appear not greyed out if I start CCP4i from the icon?
> 
> Maybe some Mac/Apple-expert can help there ... ?
> 
> Cheers
> 
> Clemens
> 
>> 
>> Many thanks in advance,
>> 
>> Mark
>> 
>> Mark J van Raaij
>> mjvanraaij at cnb.csic.es <mailto:mjvanraaij at cnb.csic.es>
>> http://www.cnb.csic.es/~mjvanraaij <http://www.cnb.csic.es/~mjvanraaij>
>> 
>> 
>> 
>> 
> 
>> _______________________________________________
>> sharp-discuss mailing list
>> sharp-discuss at globalphasing.com
>> https://www.globalphasing.com/mailman/listinfo/sharp-discuss
> 
> 
> -- 
> 
> ***************************************************************
> * Clemens Vonrhein, Ph.D.     vonrhein AT GlobalPhasing DOT com
> *
> *  Global Phasing Ltd.
> *  Sheraton House, Castle Park 
> *  Cambridge CB3 0AX, UK
> *--------------------------------------------------------------
> * BUSTER Development Group      (http://www.globalphasing.com)
> ***************************************************************

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