Sushi 3.0.15 - release notes

The easiest way to get everything into place properly, is to

1. download all new packages (requires password, see password reminder)

2. update your existing installation:

         % cd $BDG_home
         % adm/bin/kill_server
         % ./installSHARP -U
         

1. download all new packages (requires password, see password reminder)

2. create a new directory and install:

         % mkdir /public/sharp
         % cd /public/sharp
         % ./installSHARP -f
           - or -
         % ./installSHARP -F
         

Changes since version 3.0.14

• autoSHARP
  • added more checks throughout
  • can now be run independent of the httpd (i.e. with everything in single directory)
  • some changes/fixes to density modification (to speed things up) and ARP/wARP part (to build more) of autoSHARP
  • now does more than one pass through interpretation of residual maps: this way we can start from very few sites and add more during refinement/interpretation.
  • automatic building with ARP/wARP 6.0 now reports some basic stats
  • small changes so that handling of several molecules/asu becomes more automatic
  • more automation in defining starting heavy atom parameters (like temperature factors)
  • slightly changed defaults in HA detection
  • changes in automatic interpretation of residual maps - should be more robust now
• the problem with MTZ files seen but no column labels visible should be sorted
• tested with latest CCP4 release (4.2.2) (as well as with ccp4-4.2.2-cvX)
• tested with latest Perl release (5.8.0)
• tested on i86/Linux (RedHat 7.1, 7.3, 8.0, Debian 3.0), HP-Compaq/Tru64 (4.0F, V5.1) and SGI/IRIX (6.5.16m)