Content:
Combined patch: sushi_20130614.diff.
ARP/wARP 7.3 has a problem when used from SHARP/autoSHARP (where we do want to use phased refinement during model building using Hendrickson-Lattman coefficients). The file arp_warp_7.3/share/auto_tracing.sh needs to be modified from
if ( "$arguments[$index_phaselabin]" && $arguments[$index_twin] ) then
to
if ( "$arguments[$index_phaselabin]" != '' && $arguments[$index_twin] ) then
See also the discussion on sharp-discuss and the ARP/wARP FAQ for 7.3.
You might see messages like
/sharp-2.8.1/bin/sharp/detect.sh: line 545: [: 2.00: binary operator expected
or
/sharp-2.8.1/bin/sharp/detect.sh: 545: [: Float_GT: unexpected operator
caused by a typo in bin/sharp/detect.sh. Line 545 should be changed from
[ Float_GT $resh $autoSHARP_DETECT_ModelBuildingResLim ] ); then
to
( Float_GT $resh $autoSHARP_DETECT_ModelBuildingResLim ) ); then
Without this change the new building module long_john_silver (using PIRATE and BUCCANEER from K. Cowtan) will not be used as intended when
With the above patch applied, normal operation is reinstated.
To support the latest SHELX version (with changes to various output formats), two patches need to be applied:
There is a buglet in the map-plotting routine preventing maps from the parrot/buccaneer (LJS) module to be calculated correctly. Please apply the following patch