[sharp-discuss] ARP/wARP v7.3 auto_tracing.sh error?

[Claus Flensburg]

Hi Kip,

On Thu, Oct 25, 2012 at 01:32:16AM -0400, Kip Guja wrote:
> Hi All,
> 
> I am getting an error during model building with ARP/wARP-7.3 and SHARP-2.8.  The relevant wARP_XX.Xpc.log.html file shows:
> 
> ##################################
> 
> 1. Running "auto_tracing.sh"
> 
> Wed Oct 24 23:33:07 EDT 2012
> 
>  Working directory    /home/sharp/data/test/sharpfiles/logfiles_local/if3-c.9/wARP_38.7pc
>  Job ID is set to     20121024_233307
>  X-ray data file      /home/sharp/sharp-2.8/users/test/None.sharp/logfiles/if3-c.9/eden_flat_38.7pc.mtz
>  Sequence file        /home/sharp/sharp-2.8/users/test/None.sharp/logfiles/if3-c.9/wARP_38.7pc/seq_monomer.pir
>  Tracing mode         WARPNTRACEPHASES
> 
>  Creating directory   /home/sharp/data/test/sharpfiles/logfiles_local/if3-c.9/wARP_38.7pc/20121024_233307
> 
>  Accepted label:      fp=FPsha
>  Accepted label:      sigfp=SIGFPsha
>  Accepted label:      fbest=FBshasol
>  Accepted label:      phibest=PHIBshasol
>  Accepted label:      freelabin=FreeR_flag
>  mtz labels taken:    FPsha SIGFPsha FBshasol PHIBshasol FreeR_flag
> if: Expression Syntax.
> 
> ##################################
>  
> When I change to ARP/wARP-7.2 using $BDG_home/adm/bin/arpwarp_setup, everything runs perfectly.  I am probably making a silly mistake somewhere, but I can't seem to figure it out. 
> 
> Any and all advice would be much appreciated!

it looks like one need change line 648 in arp_warp_7.3/share/auto_tracing.sh from:

if ( "$arguments[$index_phaselabin]" && $arguments[$index_twin] ) then

to:

if ( "$arguments[$index_phaselabin]" != '' && $arguments[$index_twin] ) then


Regards,

ClAuS (for sharp-develop)