[buster-discuss] Two errors
wei.liu at biosci.ki.se
Fri Mar 11 10:07:13 GMT 2005
I installed the Linux version of Buster-TNT last week but met two errors when using it.
1.. The script to produce TNT sequence file did not work. When I execute the following commend in Linux shell:
$BDG_home/bin/buster/pirToSeq.pl -m < test.pir > test.seq
It always gave me the following prompt
pirToSeq usage: [-m] [-s offset] <PIR> <SEQ>
-m : the user is prompted with chain type
(useful in case of complexes)
-s offset : number of first residue in PDB file
<PIR> : PIR file as for ARP/wARP
<SEQ> : output sequence file in TNT format
The output file test.seq is empty and I have to create it by manual input.
2. When press Start button on http browser for a new Buster job, I always received an error message as follows.
ERROR in /home/xray/wliu/software/buster/buffet/cgi-bin/inputform.cgi
The following return values are set:
* Child error = 0
* OS error = Inappropriate ioctl for device
* Eval error = 0
Error message : Error parsing the mtzdump output of
Cell/symmetry/resolution information is missing
However, my mtz file was created by CCP4 5.02 and all information are presented inside. Even if I copied a data file form tutorial directory in $BDG_home/busterfiles/datafiles/, the error was still there. As a consequence of this error, I cannot continue to run the program.
Any help will be highly appreciated.
With kind regards
Center for Structural Biochemistry
Novum 14157, Huddinge
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