[sharp-discuss] RNA model in phase improvement
Clemens Vonrhein
vonrhein at globalphasing.com
Thu Sep 28 15:14:18 BST 2006
Dear Kevin,
well, that part isn't that clever I guess - it only recognizes protein
residues. However, that doesn't mean that it does the wrong thing
(apart from reporting a wrong number of residues):
- do you have a file t_model.pdb in the solo_XY.Zpc subdirectory? And
does it contain the right atoms?
- what is the correlation for the model (reported just before 'Cycle'
1') in the log-file?
Cheers
Clemens
On Thu, Sep 21, 2006 at 05:17:21PM -0400, Kevin Jude wrote:
> I am attempting density modification in Sharp including a partial model
> of an RNA molecule. However, the logfile reports 0 residues:
>
> (partial) model ................................ model_Holo-4Ir.pdb (0
> residues, protein/DNA/RNA only)
>
> My pdb file format doesn't look any different from the examples like
> model_IF3-C.pdb except that it is an RNA molecule rather than protein.
> Perhaps SHARP doesn't like the way my residues are named (GUA, ADE, URI,
> CYT)?
>
> kmj
>
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