[sharp-discuss] Problems running SHARP in browser and in ccp4i
Clemens Vonrhein
vonrhein at globalphasing.com
Wed May 2 07:33:08 BST 2007
Dear Brett,
On Wed, May 02, 2007 at 12:11:45PM +1000, Brett Collins wrote:
> Dear all,
>
> I am running SHARP/autoSHARP on an intel mac running OSX 10.4.9. I am
> having two (probably unrelated) problems.
>
> Firstly when I run autoSHARP through a firefox web broswer it works
> fine, but when I try and run SHARP the new sharp input editor that
> opens up has the normal three panels but other than that is blank.
> Is there something simple I have overlooked.
Make sure to allow pop-ups in your firefox configuration (at least for
the SHARP server). Also: make sure the files in your
sharpfiles/datafiles directory are readable by the user/account that
is running the httpd.
Also: maybe the file $BDG_home/sushi/logs/error_log has some
additional info?
> Secondly I tried running autoSHARP using the ccp4i GUI but it crashes
> with an error stating that it cannot open firefox (although this
> seems to open OK for example when I open a help file from the ccp4i
> GUI).
The autoSHARP CCP4i interface tries to start a browser as configured:
have a look (from the main CCP4 window) in
System Administration
--> Configure Interface
--> External Programs
--> Hypertext Viewer
Maybe you need to put the full path to firefox in there?
>
> The actual output is
>
> # If a browser didn't automatically open the following
> # file, please open
> #
> # /Users/b.collins/26B/c4/106_autoSHARP/autoSHARP.0/
> LISTautoSHARP.html
> #
> # in a browser (like firefox, mozilla etc)
> #
>
> As far as I can tell there is no file LISTautoSHARP.html
That's a bit funny ... it should create that file/job, even if it
can't fire up the browser ...
> an then...
>
> #CCP4I TERMINATION STATUS 0 Error from script /Users/b.collins/.CCP4/
> CCP4I_TOP/scripts/autoSHARP.script: couldn't execute "firefox": no
> such file or directory
> #CCP4I TERMINATION TIME 02 May 2007 11:51:51
> #CCP4I TERMINATION OUTPUT_FILES /Users/b.collins/26B/
> c4/106_autoSHARP/autoSHARP.0 /Users/b.collins/26B/c4/106_autoSHARP/
> autoSHARP.0/.autoSHARP 26B
> #CCP4I MESSAGE Task failed
>
> Again is there something simple that I haven't configured properly.
I would recommend running autoSHARP through the httpd-based interface
(instead of the CCP4i one): you get more features with it (looking at
maps, analysing LLG maps, fine-tuning density modification, difference
Fourier maps, adding more datasets etc etc).
Cheers
Clemens
>
> Thanks in advance
> Brett
>
>
>
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>
--
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* Clemens Vonrhein, Ph.D. vonrhein AT GlobalPhasing DOT com
*
* Global Phasing Ltd.
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* Cambridge CB3 0AX, UK
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