[sharp-discuss] ARP/wARP v7.3 auto_tracing.sh error?

[Kip Guja]

Hi Claus,

You're exactly right, that fixed the problem -- thank you!  

Kip

On Oct 25, 2012, at 2:59 AM, Claus Flensburg wrote:

> Hi Kip,
> 
> On Thu, Oct 25, 2012 at 01:32:16AM -0400, Kip Guja wrote:
>> Hi All,
>> 
>> I am getting an error during model building with ARP/wARP-7.3 and SHARP-2.8.  The relevant wARP_XX.Xpc.log.html file shows:
>> 
>> ##################################
>> 
>> 1. Running "auto_tracing.sh"
>> 
>> Wed Oct 24 23:33:07 EDT 2012
>> 
>> Working directory    /home/sharp/data/test/sharpfiles/logfiles_local/if3-c.9/wARP_38.7pc
>> Job ID is set to     20121024_233307
>> X-ray data file      /home/sharp/sharp-2.8/users/test/None.sharp/logfiles/if3-c.9/eden_flat_38.7pc.mtz
>> Sequence file        /home/sharp/sharp-2.8/users/test/None.sharp/logfiles/if3-c.9/wARP_38.7pc/seq_monomer.pir
>> Tracing mode         WARPNTRACEPHASES
>> 
>> Creating directory   /home/sharp/data/test/sharpfiles/logfiles_local/if3-c.9/wARP_38.7pc/20121024_233307
>> 
>> Accepted label:      fp=FPsha
>> Accepted label:      sigfp=SIGFPsha
>> Accepted label:      fbest=FBshasol
>> Accepted label:      phibest=PHIBshasol
>> Accepted label:      freelabin=FreeR_flag
>> mtz labels taken:    FPsha SIGFPsha FBshasol PHIBshasol FreeR_flag
>> if: Expression Syntax.
>> 
>> ##################################
>> 
>> When I change to ARP/wARP-7.2 using $BDG_home/adm/bin/arpwarp_setup, everything runs perfectly.  I am probably making a silly mistake somewhere, but I can't seem to figure it out. 
>> 
>> Any and all advice would be much appreciated!
> 
> it looks like one need change line 648 in arp_warp_7.3/share/auto_tracing.sh from:
> 
> if ( "$arguments[$index_phaselabin]" && $arguments[$index_twin] ) then
> 
> to:
> 
> if ( "$arguments[$index_phaselabin]" != '' && $arguments[$index_twin] ) then
> 
> 
> Regards,
> 
> ClAuS (for sharp-develop)