Pipedream Tutorials

The following pages show worked examples illustrating typical usage of pipedream and analysis of its output.

  • Tutorial 1: A typical, straightforward case involving two beta-secretase structures, that is run with default options.
  • Tutorial 2: A slightly more complex situation which requires specification of extra commands and changing defaults for pipedream.
  • Tutorial 3: An example illustrating use of Pipedream with cocktails.
  • Tutorial 4: This example illustrates the use of Pipedream where the input are unprocessed x-ray images.
  • Tutorial 5: This tutorial illustrates the use of Pipedream with multiple input models
  • Tutorial 6: A further example of the use of Pipedream with multiple models, illustrating how to deal with rigid body domain motion